ZMP

si:dkey-61l1.4

Ensembl ID:

ENSDARG00000092567

ZFIN ID:

ZDB-GENE-070705-483

Description:

Novel collagen protein [Source:UniProtKB/TrEMBL;Acc:A5WWD4]

Human Orthologue:

COL16A1

Human Description:

collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]

Mouse Orthologue:

Col16a1

Mouse Description:

collagen, type XVI, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1095396]

Alleles

There are 4 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa30617	Essential Splice Site, Missense	Mutation detected in F1 DNA	Not yet available
sa1363	Nonsense	Available for shipment	Available now
sa10054	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa30617

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > A

Consequence:

Essential Splice Site, Missense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000143098	Missense	343	1194	19	56
ENSDART00000145848	Essential Splice Site	330	1253	None	58

Genomic Location (Zv9):

Chromosome 5 (position 30859848)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	28621205
GRCz11	5	29221358

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AGATGGTGAAGTGGGTCCTCAGGGAATGCTGGGAAAAGAGGGTCAGAAGG[T/A]AAGAGTTATTTATGACTTTCAGGTGGAGCAATCACAACAAAAACATTCTT

Long Flanking Sequence:

AATAACCAAAGTTAAAATAAAAATAAAATAAGTTAAAATGACCAAAAACATATGCTGTCAGGACTAATTGATCATATATTTTTACAGTGTAAGAAAAATAACTTTATTATATATTCATAAAATATAAAGCAAATTTAAACATCTATTTTCAAATAGCGTATTTGACAACTACAAAATTGTTTACTGTTTTATTAATACATATTTTGGTTTTCGCAGTTTTTATGCCACTATCATCCATGCACCTAAATTGGTTTATATTGGGAAAGTATGGGATTTCAGACGCAGCCTTGGATTACTGTAGCTGGCTCAGGTGTTTTTAAAGTAGGAGCTAAACTCAAGGATAGTGGCCCTTCAGGAACAGGCTTGTACACCTCTGATATAAATCAGGTTTACTTAGCTTCAAAAGAAGATTTCTGGGTAAAAGATACTGTTTTCTCTCCCCCAGGGTATAGATGGTGAAGTGGGTCCTCAGGGAATGCTGGGAAAAGAGGGTCAGAAGG[T/A]AAGAGTTATTTATGACTTTCAGGTGGAGCAATCACAACAAAAACATTCTTAAAGCTCTCCATTTTACATCAGTCTACACAAGAGATCAGCTAAAACATAAAGGCTGCTCAAAAGTGATTTTTAATTGTGTCCTAGTGATACATTCACCTGAAAAACAGCATCTATTTTAATTTTGTCTCTTTAGGGCAGCAGGGGTGAACCTGGTGGTAATGGAAGAACAGGATCAAAAGGATCCAGAGTAAATTTACCGTTTGTTTTATAATCTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTGAATACATTTAATAATTTAAATATTTAAAAGAATATAGAATTTGGCACAGTTTAGGAAACTTGGTCATTGAAAAGTGATATTAATAAAGAGATTTATGATATGATACATGATACATATTTCATGTTATGTATGTGTGTGTGTGTATATATATGTCATCAGCATATTTTAAT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa1363

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000143098	Nonsense	444	1194	26	56
ENSDART00000145848	Nonsense	430	1253	24	58

Genomic Location (Zv9):

Chromosome 5 (position 30855490)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	28616847
GRCz11	5	29217000

KASP Assay ID:

554-1275.1 (used for ordering genotyping assays)

KASP Sequence:

TTTTTGTAGTTGTGATTAGATTTAGAACTGTTTTCTTGCTCTCAGGGCTA[T/A]CCAGGAGCCATCGGCCTTCGTGGACCGCCAGGACACACAGGAGAAAGGGT

Long Flanking Sequence:

AAAAAACATTTGTTTTTAAATGTAGTTGGTTAAACATTTTTTCTAGCTTTATGTGGATATATTTCTCATGTCTGTGAAGCAAGTATTCACTGTTTGTTGACTCTAGATGTTTAATAACTACTGCAGAAACTGTTGTAAAAGCACACGTCTGGTCCAAACCCCTCTCAGGGGGGAAAAGTCAGTCTATAGCGATCGATGATTGGCTCCTGTACTAGAAGGCGGGGCTTCATTTACCATATTGATGTTACGCATTTGAAACTAAATGAGCCACATGTCTTGTGTATTCTATAGTCTTTAATATAAATCAGTGTTTATATATATATATATATATTATGTGGTCTGTGTGTGATTAGGGCTTCACTGGAAAAGCTGGCTTGGCAGGTGCTCAGGGGCCTGTAGGCATGTATGTAAGTGTCGCTATCCAGTTTGATAAGATTATTCATGATATACTTTTTGTAGTTGTGATTAGATTTAGAACTGTTTTCTTGCTCTCAGGGCTA[T/A]CCAGGAGCCATCGGCCTTCGTGGACCGCCAGGACACACAGGAGAAAGGGTTTGGAAGTTTTGCATATTTTACAATGAAACTTCTCTAATAATTCTGGATGTTGTATCATATCATGTGTGTATGTATATAGGGTGAACCTGGCATTAGGGGACCATTAGGACCACCAGGGAAAAGAGGACCACCTGTAAGTTGAGCTGTATGTCAGGAAGTATCATTCATTTTATGACACCATGGTCACTTTTTGTCTAAAACTAATGTTACCCTGTTGATCTTCTAAGGGTTTAGCTGGCCCAGCTGGAGAGAGAGGCTCACGTGGACCCCCGGTAAATTTACTTAAGGATTCAAACAGACAAGATGTATTTTTTAAACTTTATTTGCTGAACTTTTTTGAATACAGAGAGGTTATCTGTGATGTTTCCAACTTTTTTAGGGTCGCCAAGGAGAAACTGGACCTACGGGCTTCCAAGGACTGCCTGTATGTAGCCCTCAGTAAAGCACAT

Associated Phenotype:

Normal

Stage	Entity	Quality	Tag
Larval:Day 5 ZFS:0000037	whole organism ZFA:0001094	quality PATO:0000001	normal PATO:0000461

Mutation Details

Allele Name:

sa10054

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000143098	Nonsense	771	1194	40	56
ENSDART00000145848	Nonsense	776	1253	39	58
ENSDART00000143098	Nonsense	771	1194	40	56
ENSDART00000145848	Nonsense	776	1253	39	58

Genomic Location (Zv9):

Chromosome 5 (position 30851277)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	5	28612634
GRCz11	5	29212787

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GCCCAAAGGGTTTCYCAGGACAAGAGGGACCWAAAGGTGAACCAGGAARA[C/T]GAGGACCGCCWGGRCTGAAAGTGAGATTSWGAAATAAATGAGAATTTATA

Long Flanking Sequence:

TCCTTGATCAGGATTACCCTTATACATTTCCTAATGCAACAGTCCTGCTCTTTGTTTTAAAAGGGTGAAACTGGATCACCAGGACCGAATGGATATCCAGGAGATCAAGGCAATCAGGTAAAATCAATGACCGTTTTCCAGAATACAACCGGTTGGGTAAAATAATCGGCATATTGCATATGTAACCAAACTGTGAACAAGACAGAAGTGTGACACATTTGACTGCTACCTGAGATTACAGAAACTTCTCAATGTCAGATTAATGCCATGCTGTTTTTTTGTCTACAGGGGCTGGCTGGCCGGAGGGGTTTACAAGGGGTTATGGGGAAGGCAGGACCTCTGGTAAGTATGGCTAACGTTTCAAGGTAAATCAGTGCTAGATTTTCAGGGGATAAATAATACTCATATTGCAGGGAGTCGTGGGTCCAAAAGGCCCCCAGGGCTTAATGGGCCCAAAGGGTTTCCCAGGACAAGAGGGACCTAAAGGTGAACCAGGAAGA[C/T]GAGGACCGCCTGGGCTGAAAGTGAGATTGAGAAATAAATGAGAATTTATATAGTGATGTATGTGATGTCAGCTGATCACTGTCTCTCTTGCAGGGTCCACCAGGTCTAACTGGTAATAATGGACCCTCTGGATTTCCTGGAAAAGAGGTAAAACTAAAAATTGGCCAAATAGTTTTTCTGGAATTTTTAATATAAGTATGTTATATATTAAATATAACATTATTGCTTATGTTGTTTGTATATTATCCAAATTAAGCAACATGCTCTTTAGTAAGAGTGTGTGATATTGACAATATTGGTGGTGATGGCTTTATAATTATTTATATTTCCTTCATAATAATAATTGAACAGTAGTTTGCTGAGTATGTGTTTGTGTTCATTAGCAGTATATTAATTCCAAATTGCAAACAATGCACAATTGGAATAGCACATACATCAAAACAAATAATAACAGTGATTAAAAACAAATAAAAACAGATTCAAATGTGTTAAAATAGGTT

Associated Phenotype:

Not determined