Busch Lab

ZMP

pcdh18a

Ensembl ID:
ENSDARG00000089805
ZFIN ID:
ZDB-GENE-000607-1
Description:
protocadherin 18a [Source:RefSeq peptide;Acc:NP_001108530]
Human Orthologue:
PCDH18
Human Description:
protocadherin 18 [Source:HGNC Symbol;Acc:14268]
Mouse Orthologue:
Pcdh18
Mouse Description:
protocadherin 18 Gene [Source:MGI Symbol;Acc:MGI:1920423]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa10805 Nonsense Available for shipment Available now
sa9402 Nonsense Mutation detected in F1 DNA Not yet available
sa32619 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa45066 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa10805
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000127838 Nonsense 229 1123 1 4
Genomic Location (Zv9):
Chromosome 1 (position 12154753)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 12583166
GRCz11 1 13269966
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCTATGAACTCCAGCTCACAGCCTCAGACAGGGGCGYTCCCCCCAAATTT[G/T]GAAYAACGCTCCTGAAAATCAGCATAGCTGACTCGAACGACAACAATCCA
Long Flanking Sequence:
CGATTCCGTTACGATTTAGAGCCATGCAGCGGGGAAGCGCGTCGCTTCTTTCGGTGCGCGACCAGGATGGAGAGATCAGCATCAGGACCAAAATAGACCGCGAGAAACTGTGTGAAAAGAATCTGAACTGCACTATCGAGTTTGATGTTCTCACTCTTCCCACGGAGCACCTACAGCTGTTTCATATTGAAGTGGAGATTTTGGACATTAACGACAATGCGCCACAGTTCGCGCGCCCCGTCATTCCCATAGAGATCTCCGAAACCGCCGCCGTGGGGACGCGCATTCCCCTTGACAGCGCCACCGATCCAGACGTCGGGGAGAACTCACTGAACACATACTCTCTGACCCCGTCTGACTTCTTTAAGATTGACATTCTAACCAGAACCGATGGAGCCAAGTACGCAGAGCTCGTTGTGTTAAAAGAGCTTGATAGAGAGGTGCGAGCAAGCTATGAACTCCAGCTCACAGCCTCAGACAGGGGCGTTCCCCCCAAATTT[G/T]GAACAACGCTCCTGAAAATCAGCATAGCTGACTCGAACGACAACAATCCAGTGTTTGAGAAGCCATCTTATGTGATCAACTTGCTTGAAAATTCCCCTTTAGGCAGTTTGCTTATTGATCTGAACGCCACTGACCCAGATGAAGGGGCCAATGGGAAAATCATATACTCTTTCAGCAGTCACGTGTCACCTAAAATATTAGAGACCTTTAAGATTAATTCTGATAATGGTCATTTGACACTGATGAGGAAAGTTGACTTTGAAAGCACAAATTCTTATGACATAGATGTTCAAGCTCAAGACATGGGCCCTAACTCGATGCCAGCCCACTGTAAAGTCATAATCAAAGTAGTGGACGTGAATGACAACAAACCTGACATCAGCGTCAACTTGATGTCCACTGGTAATGAGGAGATAGCTTATATATCAGAGACGGCTCCTGTAGATACATTCGTGGCTCTGGTGAGTGTAAATGATCTGGACTCTGGCTTAAATGGAGAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9402
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000127838 Nonsense 392 1123 1 4
Genomic Location (Zv9):
Chromosome 1 (position 12154263)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 12582676
GRCz11 1 13269476
KASP Assay ID:
2259-0310.1 (used for ordering genotyping assays)
KASP Sequence:
TGTAGATACATTCGTGGCTCTGGTGAGTGTAAATGATCTGGACTCTGGCT[T/G]AAATGGAGAGGTGGAGTGCCGTCTCTATGGCCAGGGTCATTKCAGGCTGC
Long Flanking Sequence:
CCCCAAATTTGGAACAACGCTCCTGAAAATCAGCATAGCTGACTCGAACGACAACAATCCAGTGTTTGAGAAGCCATCTTATGTGATCAACTTGCTTGAAAATTCCCCTTTAGGCAGTTTGCTTATTGATCTGAACGCCACTGACCCAGATGAAGGGGCCAATGGGAAAATCATATACTCTTTCAGCAGTCACGTGTCACCTAAAATATTAGAGACCTTTAAGATTAATTCTGATAATGGTCATTTGACACTGATGAGGAAAGTTGACTTTGAAAGCACAAATTCTTATGACATAGATGTTCAAGCTCAAGACATGGGCCCTAACTCGATGCCAGCCCACTGTAAAGTCATAATCAAAGTAGTGGACGTGAATGACAACAAACCTGACATCAGCGTCAACTTGATGTCCACTGGTAATGAGGAGATAGCTTATATATCAGAGACGGCTCCTGTAGATACATTCGTGGCTCTGGTGAGTGTAAATGATCTGGACTCTGGCT[T/G]AAATGGAGAGGTGGAGTGCCGTCTCTATGGCCAGGGTCATTTCAGGCTGCAGAAGTCATATGAGAAGAACTACATGATCCTTACAAACGTCACGCTGGACAGGGAGAAGAGGTCAGAGTTCAGCCTCACTGTTATAGCTGAAGACAAAGGTTCTCCAAGTCTATCCACCATCAAAAACTTTATTGTGGAGGTCCAGGATGAGAACGACAACGCTCCAAGTTTTGCAAAGAGCAGATATGAGATTTCCAAAGCAGAGAACAACTCGCCTGGAGCTTATTTGTCATCTGTGAAGGCCTCAGATCCAGACCTGGGCCCAAATGGACAAGTGAGCTACTCTATACTTGAAAGCATGGTCCATGGTAGCTCCATTTCCACTTACGTCACCATTGACCCATCTAACGGAGACATTTATGCACTACGTACTTTTGATCGTGAAGATGTAAGTCAGATTTCATTTTTGGTCCAGGCCCGGGATTCTGGAAATCCTCCACTGCGTAGTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32619
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000127838 Essential Splice Site 906 1123 4 4
Genomic Location (Zv9):
Chromosome 1 (position 12147180)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 12575593
GRCz11 1 13262393
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTAAAGAAACTCTAGATTACTAAAAAAAAATCTTTCTTTGCCTTTCAGC[A/T]GTCATGAGATTGTGTACGGAGGAGTGCCGTGTGTTGGGTCACTCTGACCA
Long Flanking Sequence:
CACCACATCCCATAGGTGCTCTGTTGGATTGAGATCTTGTGACCGTAAAGGCCGTTCGAGTAAATATTCTCTTTTTCAGACCATTCTTTGTAAACCCTAGAGATGTTGTGCGTGAAAATCCCAGTAGATCAGGAGCTTCTGAAACACTCAGACCAGCCCGTCTGGCACTAACAACCATGCCACGTTTAAAGTCACTTAAATCACCTTTCTTTGTCATTCTGATGCTCAGCTTGAACTGCAGCAGATCTTCTTAACTATGTCTACATGCCTAAATGCATTGAGCTGCTGCCATGTGATTGGCTGATTAGAAACTTGCATTAACGAGCAGTTAAACAGGTGTACCTAATAAAGTGGCCAGTGAGTGTATTTGTTTTGTCAAAACAATCCCCATTCACAGTCATACATAAAACCAACTAAAACTCTGTAGGCCAGTAATGGATGATGTCAGTTTCTAAAGAAACTCTAGATTACTAAAAAAAAATCTTTCTTTGCCTTTCAGC[A/T]GTCATGAGATTGTGTACGGAGGAGTGCCGTGTGTTGGGTCACTCTGACCAGTGCTGGATGCCATCTCAGGCGTCCTCGGATTACCGTGCGAACATGTTCATCCCTGGAGAAGAGAGCAGGCCTCAGGTCCTTGAGGAGGACCAGCAGTCAGTGGACTCAGCTAAGAAGAGCTTTTCTACCTTCGGAAAGGACAACGAGGAGGAATGTGGCGGCTCACTGCTGTCAGAAATGAACAACGTCTTCCAGCGTCTTCTGCCAACTTCTTATGCTGACGTCCGAGAGCTTGACGAATCCACCAGCCAGCCTGCTTCCTCCATCGGCATGGAGATCAGAAAGGGATTCCTACCGGGTAAGGCGTCATCTACAGGTTCGGCCTACCCACAGGGAGTTGCCGTTTGGGCGGCCAATACCCACTTTCAAAACCCTGGCGGTGCCGTGACGAGCGGACATGCCACAACCAATCACGCGGCATCGCAGGCGCATTTAAAATGGCTGCCGGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45066
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000127838 Essential Splice Site 906 1123 4 4
Genomic Location (Zv9):
Chromosome 1 (position 12147179)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 12575592
GRCz11 1 13262392
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTAAAGAAACTCTAGATTACTAAAAAAAAATCTTTCTTTGCCTTTCAGCA[G/A]TCATGAGATTGTGTACGGAGGAGTGCCGTGTGTTGGGTCACTCTGACCAG
Long Flanking Sequence:
ACCACATCCCATAGGTGCTCTGTTGGATTGAGATCTTGTGACCGTAAAGGCCGTTCGAGTAAATATTCTCTTTTTCAGACCATTCTTTGTAAACCCTAGAGATGTTGTGCGTGAAAATCCCAGTAGATCAGGAGCTTCTGAAACACTCAGACCAGCCCGTCTGGCACTAACAACCATGCCACGTTTAAAGTCACTTAAATCACCTTTCTTTGTCATTCTGATGCTCAGCTTGAACTGCAGCAGATCTTCTTAACTATGTCTACATGCCTAAATGCATTGAGCTGCTGCCATGTGATTGGCTGATTAGAAACTTGCATTAACGAGCAGTTAAACAGGTGTACCTAATAAAGTGGCCAGTGAGTGTATTTGTTTTGTCAAAACAATCCCCATTCACAGTCATACATAAAACCAACTAAAACTCTGTAGGCCAGTAATGGATGATGTCAGTTTCTAAAGAAACTCTAGATTACTAAAAAAAAATCTTTCTTTGCCTTTCAGCA[G/A]TCATGAGATTGTGTACGGAGGAGTGCCGTGTGTTGGGTCACTCTGACCAGTGCTGGATGCCATCTCAGGCGTCCTCGGATTACCGTGCGAACATGTTCATCCCTGGAGAAGAGAGCAGGCCTCAGGTCCTTGAGGAGGACCAGCAGTCAGTGGACTCAGCTAAGAAGAGCTTTTCTACCTTCGGAAAGGACAACGAGGAGGAATGTGGCGGCTCACTGCTGTCAGAAATGAACAACGTCTTCCAGCGTCTTCTGCCAACTTCTTATGCTGACGTCCGAGAGCTTGACGAATCCACCAGCCAGCCTGCTTCCTCCATCGGCATGGAGATCAGAAAGGGATTCCTACCGGGTAAGGCGTCATCTACAGGTTCGGCCTACCCACAGGGAGTTGCCGTTTGGGCGGCCAATACCCACTTTCAAAACCCTGGCGGTGCCGTGACGAGCGGACATGCCACAACCAATCACGCGGCATCGCAGGCGCATTTAAAATGGCTGCCGGCG
Associated Phenotype:
Not determined