Busch Lab

ZMP

arid1aa

Ensembl ID:
ENSDARG00000079879
ZFIN ID:
ZDB-GENE-080220-35
Human Orthologue:
ARID1A
Human Description:
AT rich interactive domain 1A (SWI-like) [Source:HGNC Symbol;Acc:11110]
Mouse Orthologue:
Arid1a
Mouse Description:
AT rich interactive domain 1A (SWI-like) Gene [Source:MGI Symbol;Acc:MGI:1935147]

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa6439 Nonsense Mutation detected in F1 DNA Not yet available
sa28698 Nonsense Mutation detected in F1 DNA Not yet available
sa31006 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa10925 Nonsense Available for shipment Available now
sa10989 Nonsense Available for shipment Available now
sa22893 Nonsense Available for shipment Available now
sa22894 Nonsense Available for shipment Available now
sa9394 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa6439
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 358 2285 2 20
ENSDART00000135930 None None 1788 None 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36381009)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34010792
GRCz11 16 33964822
KASP Assay ID:
554-4129.1 (used for ordering genotyping assays)
KASP Sequence:
CAGGCCAGGGTTATGGKCCCCCTGGCCCTCAGAGATACCCTATGGGCATG[C/T]AAGGACGGATGCAGTACGGCCAGCAGGTCAGTGCTCTTTTTATTTAAGGG
Long Flanking Sequence:
AGGGTTATTTGCTGTCTCTCTCTTTTTCCTTCTCCTTTTTCCACTATCGTTTCCCCTCTGGCTCTTCTCTCTCTTCTTCTCTTGTGGTTTCTTGCATTTTTATTCCGTCCTTGCTTTTCTTTTATTTCCACCCTGGCTTTTTAAAATCAAATTCTCCAGTGTGGGAGTGCAGTAGTACTGAATAATGGTTTGATTTCATGGTTTCGGATAACGTGTCCTTGAGTTTTTGAATGCTTTGTGGATGTCTTTGTGTAACACTCCGTTTATACTTTTCTGTCATTATCTGCCAGTTACCTTGTCTCAAATCTTTCTCTCGCTTCGCTCTGCAGACTCCAGGCTCCATGGATCAGATGGGGAAAATGCGCAGTCAGCCGTACGGGTCAGGTGGTCCTTACTCCCAGCAGCCTCATCAAGGGACTCCTTCAGGGCCCCAACAGGGACCTGCTTACCCAGGCCAGGGTTATGGGCCCCCTGGCCCTCAGAGATACCCTATGGGCATG[C/T]AAGGACGGATGCAGTACGGCCAGCAGGTCAGTGCTCTTTTTATTTAAGGGTGCACACTTTGCTTTTGCATTATTTATTTTTCTCTTAATGGTTTTAAGCAATATTTAGCTAAGTGTGTTTTAGTGCTGGCTTTTAGGCTGGTCATGGATAAATAAATTTGACACTGGCACCACCAGTAGGTGATAAGTCCTTGTTTTATTCTTTTAACATATTAAACTTTACCACGCAAGATCCAGAAAACGCCAAGATGACGATCAGCCACTGGCCTTCATCGGTCCTGATAGTTGGTTTGGTGTGTCCCACACATCGCCTCTCGTCGGGTTGACATTTGGTTGACATCGTTGGCCCAAATGAGCATGTCAAATTGGCGTCGGCCATCAGCTGAAGAGAGCTCTCCGACTGGTTTTTTAGCAACGAATCAGAGCAGGAAGTGAAATGATGTAGCAAGTAAACAATTCAAGTAAAAAATGAACACAAAGAGGCCATAACATTGCTACATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa28698
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 463 2285 3 20
ENSDART00000135930 None None 1788 None 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36388406)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34018189
GRCz11 16 33972219
KASP Assay ID:
2261-0028.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCAGGGGCAGATGACTGGTCCCTCGCCGGGCCCTTCCCAGTCCCCATACT[C/A]GCAGTCGTCGGCAGCAGCAGCAGCAGCAGCACCCCAGTCTAGCCAGTCTC
Long Flanking Sequence:
TAATCTGATTAAATTAATCAAAAATGGCTGTGTACATGGTAGACTTTTAATCAGAGTATTGTCTTAATCTTATTAAAATCAGATTATTGGTGTCAATGTAAACATACTCAATGACTGGATGGTTGTTTTGTCTTCCCTTACATGAGATAAATCAGTGAAGGAAATGCCTTGAGTGTAATGATCTTTAGTGCCATCCTTCTGGTTTGTGCAGATGCCATCATATGGACAGCAGGGACCAGGGGGTTACATGCAGCAGGGGCAGCAGTCCTATTACGGCCAGCATGGTCCGGGTCCTCACCCGGGCCAGCAGCAGTCGCCATACCCTCAGCCTTCCCCTGGGCAAGCAGGAGGACAGGGACCTTACTCGCAGCAACCTCATGCAACCCAGTCATCAGGGCCGCACGGACAGACAGGCACTCCTTACCAACAACCCCACATGTCCCAGCAGCCTCAGGGGCAGATGACTGGTCCCTCGCCGGGCCCTTCCCAGTCCCCATACT[C/A]GCAGTCGTCGGCAGCAGCAGCAGCAGCAGCACCCCAGTCTAGCCAGTCTCCTTATTCACAACAACAGGTGCCTCAGTCCCAGCCCTCACAGCAGGGGAGCTCTCAGGCTCCTCCTGCTTCCCAAACGCAGCCCAGTTACCCGCCCGGCCAGGGGCCACAACAGCAGCAACAGCCATCGGCCTCCCAGCAGCCACCGCAGACGCCCACACCTGCTTCTCAAACGCCTGCGGGACACGCACAGATGCCACAGGGACAGCCCACGTCCTACTCCCAGAATCCCCCACAACAACAACAACAACAACAACAACCACAGCAGCAGCAGCAGCAATCGCCGTATCAGCGCTTTCCTCCTCCTCCTCAGGTAACTTGAGCTTTCTGCTATTACATGTAAGTGCTGAATGAAAATGAAAGTGAGAGTTACTGTCTACTGTCAGTGTTTTGCTATCAAGTGAGGTTAAGTGTATGTTAACATGAATTAAAGGGTTAATTCAACCAGAAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31006
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Essential Splice Site 885 2285 8 20
ENSDART00000135930 Essential Splice Site 387 1788 6 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36396146)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34025929
GRCz11 16 33979959
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGGATGCTGGAGCAATGCAGCACGGTCCAACCAACTCGATACACAACAG[G/A]TACAGAAGAGCTTAAATTCAACATATGATTGAGTATTGATCTAAAATGGA
Long Flanking Sequence:
CTTCATCAGTGCTAACTGTTCAGTTTACACCAAAACTATTAATAATGCGGATTTTTGCCAAAAAAATGCAGTCCTATATTAACTATGATTACTTTAGCATTATGTAGGCTCGATTTGCACTTTTTGACTATCTTTTTGTTGGCCTTGACACCCTTTATACAATATTTCTCTTCAGGTTATCCCAGGCAGCCAGGTTACAGTGGCATGCCTAATGCTAATTACCAAGGCCCTGGCATTGGCGGATCCATGAACCCCATGTCTGGACAAGGAGGAGGACCGATGTTTGCAGGCATGCCTTCTGCACGGATGCCTCATGGCCAGATGGGTGCACGACCCTATGGTCCCAACATGGGTCCTAACATGAGTCCCAATATGGGTCCTAATATGGGAAACATGCCCCCTCAAGTGGCAAGTGGGATGTGTCCACCCCCAGGTCTGAACAGAAAGCCACAGGATGCTGGAGCAATGCAGCACGGTCCAACCAACTCGATACACAACAG[G/A]TACAGAAGAGCTTAAATTCAACATATGATTGAGTATTGATCTAAAATGGATGATTTGTTAGACGTGTCTTGTTTTTCTGAGTACAAGCTAAAGTTAATTGATGTGTTTTGCCTCACAGGCTACCAGGTTACCCCAATATGTCTCCTGGTCCTGGTATGATGGGTTCCGGATATGGCCCCTCTATGAACAACATGCCTGGGATGATGAACACGCAGGGTTCTCCCTACCCTATGGGTGCTAACATGACTAACAACACTAGCGGTAAGGCTGTCAAAAAAATGTATTTCTTAATGCTACAGAGCCTAGCTGAAATTAAAGTATTTAATCTGTAAAGGCAAAATTATTTAAACTCCAAATCATGGTTATCTATTTTTTTTTCTTCATAGGCATGTCTCCTGGTCCAGATTTTGGTATGGATGGGAAACTTAACCAAGCCCAGAAAATGAATAACAAAGTTGAGGGGACACCGAAGACAGAATCAAAATCCAAGGTTTGCTCAA
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa4673
Status:
Allele not cryopreserved
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 903 2285 9 20
ENSDART00000135930 Nonsense 405 1788 7 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36396319)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34026102
GRCz11 16 33980132
KASP Assay ID:
2261-0030.1 (used for ordering genotyping assays)
KASP Sequence:
CCAGGTTACCCCAATATGTCTCCTGGTCCTGGTATGATGGGTTCMGGATA[T/A]GGCCCCTCTATGAACAACATGCCTGGGATGATGAACACGCAGGGTTCTCC
Long Flanking Sequence:
AGGTTATCCCAGGCAGCCAGGTTACAGTGGCATGCCTAATGCTAATTACCAAGGCCCTGGCATTGGCGGATCCATGAACCCCATGTCTGGACAAGGAGGAGGACCGATGTTTGCAGGCATGCCTTCTGCACGGATGCCTCATGGCCAGATGGGTGCACGACCCTATGGTCCCAACATGGGTCCTAACATGAGTCCCAATATGGGTCCTAATATGGGAAACATGCCCCCTCAAGTGGCAAGTGGGATGTGTCCACCCCCAGGTCTGAACAGAAAGCCACAGGATGCTGGAGCAATGCAGCACGGTCCAACCAACTCGATACACAACAGGTACAGAAGAGCTTAAATTCAACATATGATTGAGTATTGATCTAAAATGGATGATTTGTTAGACGTGTCTTGTTTTTCTGAGTACAAGCTAAAGTTAATTGATGTGTTTTGCCTCACAGGCTACCAGGTTACCCCAATATGTCTCCTGGTCCTGGTATGATGGGTTCCGGATA[T/A]GGCCCCTCTATGAACAACATGCCTGGGATGATGAACACGCAGGGTTCTCCCTACCCTATGGGTGCTAACATGACTAACAACACTAGCGGTAAGGCTGTCAAAAAAATGTATTTCTTAATGCTACAGAGCCTAGCTGAAATTAAAGTATTTAATCTGTAAAGGCAAAATTATTTAAACTCCAAATCATGGTTATCTATTTTTTTTTCTTCATAGGCATGTCTCCTGGTCCAGATTTTGGTATGGATGGGAAACTTAACCAAGCCCAGAAAATGAATAACAAAGTTGAGGGGACACCGAAGACAGAATCAAAATCCAAGGTTTGCTCAACATTTACATGGAAGTGAATTGTCTTTACTAAAGTCGCACTTCGCATTTACTTCCTTCGATTTAACCTTGTTCTATCTAGAAGTCAAGTTCCTCCACAACAACCAGTGAGAAGATCACTCGCTTGTACGAGCTTGGCCCAGAGCCGGAAAGAAAGATGTGGGTAGATCGTTACT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10925
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 1327 2285 18 20
ENSDART00000135930 Nonsense 830 1788 16 18
ENSDART00000084263 Nonsense 1327 2285 18 20
ENSDART00000135930 Nonsense 830 1788 16 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36398614)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34028397
GRCz11 16 33982427
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TATTATTTGCATTGGTTAATCTTTTTTTTTTTTTTTTTAATTCAGAACTA[C/A]AAAAGGCCAGGTGATGGCAGCTATCCTCCAGCTAAACGGCATCATGATGG
Long Flanking Sequence:
CACCAACTATGAGAGAAGGTATACTGAATGTTTGCTTAAGACATAAACTCACTTTTTTTTGTTTTGTGGTGTTATGGAAATTATGCAATGAACTGTGCTGTTTTGAGTAGACCAGAATCAGGGATGGGCCCAGATGGCAGCATAGGGCCTGGAGTGCCACAGCCAAATATGATGCCTTCCAATGCTGAATCTGGGATGTACTCACCAAACCGTTACCCTCCACAGCAACAGCGGTCAGTCCACTAACTGTTTTGATTTTAATGAAGATTTTATATCTGCCTCTACATCTGATTTCATTTGCATTTGGTGCTCTGTGCAGGCATGATTCCTATAGTAGTCAGTATCCAGGACAGAGTGCACCACCTGCTGGCTCCTATCCGAATCAGCAGCCTGGAATGTTCCCGCAACAACAATCGGTAGGGAAGCAGTTATAAGGATGATTTGATGGTTTATTATTTGCATTGGTTAATCTTTTTTTTTTTTTTTTTAATTCAGAACTA[C/A]AAAAGGCCAGGTGATGGCAGCTATCCTCCAGCTAAACGGCATCATGATGGGGAGATGTTTGGTGGGCCATACAATGCTCAGCAGCCACAGCCACCAACGCAGGCTCCCCCTAGTGGACCCACAAGTGCTCAGCAGGAAATGTATAATCAGTATAACAGTTCTTACCCTGGTTCAGAGCGTCGCCCTCCAGGTGCTCAGAATCAGTTTCCTTTCCCTTTTGGAAGAGATCGGATGCAACCAGGGACTGGCCCAAACTCCCAGGGTTCTATGCCTCCTCAAATGATGGGCAGTCAAATGCAGTCTGCTCCTGATGGTCCTCAAGGTGGTATGTGGCAGGGCCGAGGTGATATGGGCTACTCCAATTACCCCAATCGTCAGGGGCCTCCTGCTGGTCCTGGCCAGGGCCCTGGTTACCATACAATGAACAGATCTGAAGACATGATGTCATCTGAACCACGTATGAATCATGATGGGCAGTGGCCTGGGCCACGTCAACCCCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10989
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 1327 2285 18 20
ENSDART00000135930 Nonsense 830 1788 16 18
ENSDART00000084263 Nonsense 1327 2285 18 20
ENSDART00000135930 Nonsense 830 1788 16 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36398614)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34028397
GRCz11 16 33982427
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TATTATTTGCATTGGTTAATCTTTTTTTTTTTTTTTTTAATTCAGAACTA[C/A]AAAAGGCCAGGTGATGGCAGCTATCCTCCAGCTAAACGGCATCATGATGG
Long Flanking Sequence:
CACCAACTATGAGAGAAGGTATACTGAATGTTTGCTTAAGACATAAACTCACTTTTTTTTGTTTTGTGGTGTTATGGAAATTATGCAATGAACTGTGCTGTTTTGAGTAGACCAGAATCAGGGATGGGCCCAGATGGCAGCATAGGGCCTGGAGTGCCACAGCCAAATATGATGCCTTCCAATGCTGAATCTGGGATGTACTCACCAAACCGTTACCCTCCACAGCAACAGCGGTCAGTCCACTAACTGTTTTGATTTTAATGAAGATTTTATATCTGCCTCTACATCTGATTTCATTTGCATTTGGTGCTCTGTGCAGGCATGATTCCTATAGTAGTCAGTATCCAGGACAGAGTGCACCACCTGCTGGCTCCTATCCGAATCAGCAGCCTGGAATGTTCCCGCAACAACAATCGGTAGGGAAGCAGTTATAAGGATGATTTGATGGTTTATTATTTGCATTGGTTAATCTTTTTTTTTTTTTTTTTAATTCAGAACTA[C/A]AAAAGGCCAGGTGATGGCAGCTATCCTCCAGCTAAACGGCATCATGATGGGGAGATGTTTGGTGGGCCATACAATGCTCAGCAGCCACAGCCACCAACGCAGGCTCCCCCTAGTGGACCCACAAGTGCTCAGCAGGAAATGTATAATCAGTATAACAGTTCTTACCCTGGTTCAGAGCGTCGCCCTCCAGGTGCTCAGAATCAGTTTCCTTTCCCTTTTGGAAGAGATCGGATGCAACCAGGGACTGGCCCAAACTCCCAGGGTTCTATGCCTCCTCAAATGATGGGCAGTCAAATGCAGTCTGCTCCTGATGGTCCTCAAGGTGGTATGTGGCAGGGCCGAGGTGATATGGGCTACTCCAATTACCCCAATCGTCAGGGGCCTCCTGCTGGTCCTGGCCAGGGCCCTGGTTACCATACAATGAACAGATCTGAAGACATGATGTCATCTGAACCACGTATGAATCATGATGGGCAGTGGCCTGGGCCACGTCAACCCCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22893
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 1438 2285 18 20
ENSDART00000135930 Nonsense 941 1788 16 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36398947)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34028730
GRCz11 16 33982760
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATGGGCAGTCAAATGCAGTCTGCTCCTGATGGTCCTCAAGGTGGTATGTG[G/A]CAGGGCCGAGGTGATATGGGCTACTCCAATTACCCCAATCGTCAGGGGCC
Long Flanking Sequence:
GTAGTCAGTATCCAGGACAGAGTGCACCACCTGCTGGCTCCTATCCGAATCAGCAGCCTGGAATGTTCCCGCAACAACAATCGGTAGGGAAGCAGTTATAAGGATGATTTGATGGTTTATTATTTGCATTGGTTAATCTTTTTTTTTTTTTTTTTAATTCAGAACTACAAAAGGCCAGGTGATGGCAGCTATCCTCCAGCTAAACGGCATCATGATGGGGAGATGTTTGGTGGGCCATACAATGCTCAGCAGCCACAGCCACCAACGCAGGCTCCCCCTAGTGGACCCACAAGTGCTCAGCAGGAAATGTATAATCAGTATAACAGTTCTTACCCTGGTTCAGAGCGTCGCCCTCCAGGTGCTCAGAATCAGTTTCCTTTCCCTTTTGGAAGAGATCGGATGCAACCAGGGACTGGCCCAAACTCCCAGGGTTCTATGCCTCCTCAAATGATGGGCAGTCAAATGCAGTCTGCTCCTGATGGTCCTCAAGGTGGTATGTG[G/A]CAGGGCCGAGGTGATATGGGCTACTCCAATTACCCCAATCGTCAGGGGCCTCCTGCTGGTCCTGGCCAGGGCCCTGGTTACCATACAATGAACAGATCTGAAGACATGATGTCATCTGAACCACGTATGAATCATGATGGGCAGTGGCCTGGGCCACGTCAACCCCCCTTTGGGCCTGGTGGGGCAGGCCCACCAATTAGCAGACCCTTGCAATCTAACTACCAGTCTCCCCAAACCATGCAAAACCACATTCCACAGGTGTCAAGCCCCACACCCATGCCTCGCCCCATGGAAAGCAGGACTTCTCCCAGCAAGTCACCTTACATGCCCAGCAATATCAAAATGCAGAAGGCGGGGCCTCCAGTCCCTGCATCTCACATAGTACCTCCCTCAGTGCAGCCTCCAATGATGAGAAGAGACCTATCCTTCCCCCCAGGTTCTATAGAGGCAACACCACCAGTTCTCAAATCTCGCAGGCGTCTTACCATGAAAGAAATTGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22894
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 1723 2285 20 20
ENSDART00000135930 Nonsense 1226 1788 18 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36399994)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34029777
GRCz11 16 33983807
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGAAGATGGAGAAACTGAAGAGGAAGATGAAGGGGAAGAAGTGCAGAGGT[C/A]AAAACATCAAGAACAACATGCAGCACAAGTACCTCTCCAAATAAAACAGG
Long Flanking Sequence:
ATAACTTAGAACTGTGAGTTATACATGGGTAACTGTATACTCCTTTTATAGGCACTCCAGAAGCATGGAGAGTTATGATGTCTCTTAAATCTGGACTGTTGGCGGAGAGTACATGGGCTTTAGACACCATCAATATCTTATTATATGATGACAACAGTATTTCAAATTTCAACCTCATGCAGGTAAGTCGTTTTGGGAAAATGACACATATCTTTTTTTTTTTTTGCCAATACTCTAGTTTTCATCCTAAATGATATACTGGTGTTTTCTTTTGAAGCTCCCTGGTTTCCTGGAACTGATTGTTGAGTATTTCCGCCGTTGCCTCATTGAAATCTTTGGCATTCTGAGGGAATATGAAGTTGGAGATCCAGGACAAAGAGCTCTGTTGGATCCCAATGTCCTTAAAGAAGAAAACACTGTGGAGGATGAGGCATTTATGGAGGGCATGGAGGAAGATGGAGAAACTGAAGAGGAAGATGAAGGGGAAGAAGTGCAGAGGT[C/A]AAAACATCAAGAACAACATGCAGCACAAGTACCTCTCCAAATAAAACAGGAAGAAAAGCCAATGACTCTTGAAGAATCTGTGAAGAAAGAAGACAGCCAAGGCATTGAAGGAGAGTCATCTGCAGAAACCAAGGCTTCAGAGCCACCGTGTCTTGAGTTGGCTGTGACTCAAGAGAAGCCCAAACAGGCTAGCAAGTTTGATAAGCTTCCCTTGAAGATAGTGCGAAAGAAGGACCCGTTTGTAGTAGACTGCTCAAATAAGCTTGGCCGGTTGCAGGAATTTGACAGTGGACTCCTGCACTGGAGTATTGGTGGAGGTGATACAACAGAACACATCCAGACCCACTTTGAAAGCAAGATAGAGCTGTTACGCCAACGAACTCGTTTACCTGCTCAGGGCTCAGACAGGAAGAAAGGAGCTCAGAAGGAAAGCCAGGCCCCTTCATTGCCTTTATCTAGTGAAGAGCATCGGAAAGAAGTGGACCGGCAGCCTTCTCCTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9394
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000084263 Nonsense 2209 2285 20 20
ENSDART00000135930 Nonsense 1712 1788 18 18

The following transcripts of ENSDARG00000079879 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 16 (position 36401451)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 34031234
GRCz11 16 33985264
KASP Assay ID:
2261-0033.1 (used for ordering genotyping assays)
KASP Sequence:
TAGGGAATCTGTTGGGCTTCTTGGAGGACAGCTTAGCGGCTACACAGTTC[C/T]AGCAGAGCCAAGGTTCCTTACTTCACATGCAGGGGTCACACTTTGAGCCA
Long Flanking Sequence:
GTAGCAAGAAAGATGAGTGGTGGTGGGACTGTCTGGAGCTTTTGCGGGAAAATTGCTTGGTCACACTTTCCAACATCTCAGGCCAGCTTGACTTCTCTGTCTACACTGAGAGCATCTGCCTGCCCTTGCTGGATGGATTGCTCCATTGGGCCGTTTGTCCTTCAGCAGAAGCTCAAGACCCCTTCCCCAGTCTCGGGCTTAACGGAGCCTTGTCCCCCCAGAGACTTGTCCTGGAGACCCTCTGTAAGCTCAGTGTTCAGGACAACAATGTGGACCTCATTCTTGCGACGGCACCTTTTAGTAGATTAGAGAAGCTTTTTGGGAACCTTGTTCGTCTAGTTGGAGAGCGAAAGGTGCCTGTTTGCCGGGAGATGGCGGTGGTGCTGCTGGCTAATCTTGCACAGGGTGATAGCATGGCAGCCCGTGCCATTGCGGTACAGAAGGCCAGTGTAGGGAATCTGTTGGGCTTCTTGGAGGACAGCTTAGCGGCTACACAGTTC[C/T]AGCAGAGCCAAGGTTCCTTACTTCACATGCAGGGGTCACACTTTGAGCCAACTAGTGTGGACATGATGCGGCGAGCTGCTCGGGCACTGCTCGCCCTCGCTAAGGTGGAGGAGAACCACTCTGAGTTTACGCTCTATGAATCACGGCTACTGGACCTTTCTGTCTCCCCCCTCATGAACTCAATGGTGTCCCATGTCATCTGTGATGTACTCTTTTTGATAGGCCAGTCATGACAGCTGTGCGGAGCTGTGGCTCCAGCTTCTCTGGTTTTCATACTTCCTCTTTGCCTGTCCTCCCCATTGGCGAGTGGGGATTGAAAGCAGAGAAAATTGACTGTTTCTTGTTTTGTTTTTTTGTTTGTTTTTTTTTTATTTATGCAAGCCGTTTCATATTACACCCACTGGTCCCCCTTTTCCTCCGTGTCTCACTTTGGGAAGGTTGTCTCGAATTTGCTGTGGATCATGAACCAGAGCCTCAACACACTGACACAAACTGTAACA
Associated Phenotype:
Not determined