Busch Lab

ZMP

si:dkey-85a20.2

Ensembl ID:
ENSDARG00000079055
ZFIN ID:
ZDB-GENE-090313-346
Description:
Novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Source:UniPro
Human Orthologue:
TARBP1
Human Description:
TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:11568]
Mouse Orthologue:
AC151908.1
Mouse Description:
TAR (HIV-1) RNA binding protein 1 [Source:RefSeq peptide;Acc:NP_001153379]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa22365 Nonsense Available for shipment Available now
sa5866 Nonsense Mutation detected in F1 DNA Not yet available
sa18458 Nonsense Available for shipment Available now
sa9210 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa22365
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113259 Nonsense 199 1578 1 29
ENSDART00000132198 None None 396 None 10
ENSDART00000133636 None None 581 None 13
Genomic Location (Zv9):
Chromosome 13 (position 39837782)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 39151883
GRCz11 13 39277773
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATAT[G/A]GGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCA
Long Flanking Sequence:
CACAGAGAAGATTGAAGCTCTAACTGTTTTGATCAAGGAGCTCTCCATTAAACCACAAGAAGAGCGCTTTATCCGTAAAATACAGTCAGTGTTATGGAATCAGTGCATGCCGGTAATACAAACCATCTTGAGATCAGAAGATGGAGGAAAGAATCTGCTCAATGCTGTCTGTGGACTGTTTGCAGTTTGTGTCAACGTTTGTCAGAGCAGCGATGTACCTGAGCAGATCCTTCAAGCTCTTCTACCTGTGCTGATGACGAAAGATGACGCCAACCATGAAGCCAATAGAGCTGACATTGAAGTCGCCATCGAAGCCATCGGAGTTTTGTTATCCAGCATCTCAAATGACAGGTCCATCATCTCCAGGACTCTTTCGAGCACCCTTAACTGTGTTAAACATCTATCTGACTCCATAATCTCCAAAATCATAGTGCGCATCTGGTTCACCATGCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATAT[G/A]GGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCACTCGGGTTTTGTTGTGTCTCACTGCTCTTTCTGACCATCTCTGCTCTTCTGAAACATCTCCAAACCGACCGGACCCTAGAAGGTCTCAGAGGTTCTTTAGGGCGGTTCAAGATGGATTGACGCACAGGGATAGTGTGACCCGCAAACGGGCGCTTTATTTGCTTACCAGGTGTGTGTCACTAGCAGAGATGAAGAAAGAAGAAGTGGTTAGCATTGAGGAACATGAAACAGGTGAGTCGATGTTGGATATCTGTCATATTGTCTGAGGTATTTTGTGATTTTTGTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTCAGATGGACACCAGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTATGCTTTAGTTTTAGAGACTCTAGAGGAAAATCAGGTAAGGAGATTTCATGTGGAGCTTCAAATTGATGAAAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa5866
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113259 Nonsense 298 1578 2 29
ENSDART00000132198 None None 396 None 10
ENSDART00000133636 None None 581 None 13
Genomic Location (Zv9):
Chromosome 13 (position 39838161)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 39152262
GRCz11 13 39278152
KASP Assay ID:
554-3959.1 (used for ordering genotyping assays)
KASP Sequence:
TTTTTRTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTC[A/T]KATGGACACCMGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTAT
Long Flanking Sequence:
ACCCTTAACTGTGTTAAACATCTATCTGACTCCATAATCTCCAAAATCATAGTGCGCATCTGGTTCACCATGCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATATGGGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCACTCGGGTTTTGTTGTGTCTCACTGCTCTTTCTGACCATCTCTGCTCTTCTGAAACATCTCCAAACCGACCGGACCCTAGAAGGTCTCAGAGGTTCTTTAGGGCGGTTCAAGATGGATTGACGCACAGGGATAGTGTGACCCGCAAACGGGCGCTTTATTTGCTTACCAGGTGTGTGTCACTAGCAGAGATGAAGAAAGAAGAAGTGGTTAGCATTGAGGAACATGAAACAGGTGAGTCGATGTTGGATATCTGTCATATTGTCTGAGGTATTTTGTGATTTTTGTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTC[A/T]GATGGACACCAGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTATGCTTTAGTTTTAGAGACTCTAGAGGAAAATCAGGTAAGGAGATTTCATGTGGAGCTTCAAATTGATGAAACAAGACTGACTGTTTACAATATCAAAATATGAATATCAAAACAATATCAAAACTGCTATATTGCTGTTTCTGCTTAAATGTTTATACTTTAGTTTAAAAAAAATACACTTATAGGTTTGTATAGGACAAAAGTGTTGGTCATAATAAATAAATAAATAAATGAAAGTATCTGAATTTTATGTATTTTTACCCTTCAAAATTCAATTCAAACACTTTGTTTATGATTCGGTTTCTCTCACAGTCCACAAACATGTGTTATAGGTGAATTGGGTCATCAAAAATCGGTTATAGTGTGTGTGAGAGAGAATGAGAGTGTATGGGTTAAGGCTGCTCGATTTTGGTAAAAATCTTAATCACGATTATTTTGGTCATAATTGTAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18458
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113259 Nonsense 393 1578 4 29
ENSDART00000132198 Nonsense 9 396 1 10
ENSDART00000133636 None None 581 None 13
Genomic Location (Zv9):
Chromosome 13 (position 39842510)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 39156611
GRCz11 13 39282501
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGTTCATCACCTGTTACAGCTGAAAGCRCTGCATCAGCCTGCTTTTGCTT[T/A]GGCCTTTTCACAGGTATCCTTYCTTCCTTCCTTTATTTYTTCCATCCACC
Long Flanking Sequence:
TGTCACTGCAAATACACAATGTTGCCAAAAGTTGTGGCGTTTGCATTAACAGATCCAAAATGATAACATGAGGAAAAACTAAAAAAATGTCCATAGAAACATACAAGGGTTAAATCAAAAGTTGATGCATGTGCAGTCCAGATCTTTATTAAAATATAATTTATTTTTTGTTATTGGTGTAGATATTCATTCAAACTGTTTCTTTTTCTTTTTCTCTCATATAAAGATTCATGTGATTCGACCTGTACTCAACAGAATAGACATGCTCGTTGAGACAACCACAACTGACATTCAAGGTTGGTCAGATTCCTTTATTGGGAGCACATGCAGGAATATGAGTTAGTCTGATTGTATCTCTCCATCCTCAGGAGGGCTGTTTTCTCCATCATGGCTGCTGTGTGTGTATCAGCGCATGTTTCACAGCGAGAACAAAGCCGTCATGAAGGAAGGAGTTCATCACCTGTTACAGCTGAAAGCACTGCATCAGCCTGCTTTTGCTT[T/A]GGCCTTTTCACAGGTATCCTTTCTTCCTTCCTTTATTTCTTCCATCCACCCTTTCACCGTCCATCCCCCCCATCCATCATTTTATCCTTCCTTTTATCCTTCCTTCTACCCTTTCATCTTCCATACACTTTCATCATCCATTCACCCTTCCTACTTTTATCTTTTCCTTTCATACATCATGTCATCCGTCCTTTTATCCATCCATCCATCCATCCTTCCTTCCACCTTTTCATCTATCGATCCACTCTTTTATCCATCCTTCCTTCCTTTCATTCTTCCTTTTATCTATCATTTTGTTCATTCATACGTTTTCATCCTTTCCTCCTTCCATCCTTCCTTTTGTCTATCCTTCTTCCTACCATCATTCTTTCCCACCATCCATCTTTTCATTCATCCTTCTTTTTATCCATTCATCCATCCATCCTTCCTTTCACCCTTTCGTCTATAGACCCACCCTTTTATCCATCCTTCCTTTCATCTATTATTTTATTCATATGTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9210
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113259 Nonsense 477 1578 7 29
ENSDART00000132198 Nonsense 93 396 4 10
ENSDART00000133636 None None 581 None 13
Genomic Location (Zv9):
Chromosome 13 (position 39844751)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 39158852
GRCz11 13 39284742
KASP Assay ID:
2260-6834.1 (used for ordering genotyping assays)
KASP Sequence:
CGRCAGTGGTGCGCAGTCCCACTGCTCTTTCTGTCCCAGGCCCTGTCCTG[T/A]CTGGCCCCCTGTCCTTTACTGGGAWCTGATGGACTACAGGCRTTCAGGTA
Long Flanking Sequence:
AATATACATATAGCTGATATGCTATCATGTGTTATCTGTAATGATTGTTTGAAAAACACTAGAAAAAAATACACCAAGTATAAATGTGCAGATTGAACAGCTCAAAAAAATTGTTACTGTAATTATTTTACATTCACACTTTTAATGCATGTTTCAAATAATGCAACACAATACAATACATGTATATATCCTAATCCTACCACAATACCATGGTTCAGTTACTGATAATAGAGTAAATCAATGGAATATCTTTCTAACCAGATGTTTTTGGTTTTTTTTTTTTTTTTTTTAACATCAAATATGGTGTACACTGATGCAAGCTGACAGTTAATTGGCTCTTTTCTGAGTTTGTGATTAATATGTGCCTCTGCTTCATAATTCATGCTAATGTTGTTGTTATTGTTGTATTCAGGTTCAGTGTTGCTGCGGCTCATTCAGCGCTTGGGCTCTCGGCAGTGGTGCGCAGTCCCACTGCTCTTTCTGTCCCAGGCCCTGTCCTG[T/A]CTGGCCCCCTGTCCTTTACTGGGATCTGATGGACTACAGGCATTCAGGTACAAACCACTACCTGCTAGACTCTAATAATCCTGAACTGAAGAAGAGATATTACTGTTTTATTTTTAAAAAGGATGGGCATTTTTACGTTTTGCATTATTATTACCATTCACAGCAGGGGTTTTCAAACTTTTCCATGCCACAGACCTAATATGATCATCCATGTGCTAATTACACCCATTGTTAAATGTGAAAACATCTACATATTTATCCTTTATCATTATCAAAAAAACTTCTACTCGTTATAGCAATAATTTATTGGTTTTATTTGATTTATAATTATAGCATAATTGTATTATTTCATCATGTTTTTATTTGGATTTTTAAAATCTATTTTTAATAAATGACTTTAATCTTATTCAGCCATATTTTTGCCATTTAGCAGTTATTATAATTATTAGATTATTTTATATTTATAAAAGTATTTCTTTTATACTGATAAGTTTTTATTA
Associated Phenotype:
Not determined