ZMP
si:dkey-85a20.2
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Source:UniPro
Human Orthologue:
TARBP1
Human Description:
TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:11568]
Mouse Orthologue:
AC151908.1
Mouse Description:
TAR (HIV-1) RNA binding protein 1 [Source:RefSeq peptide;Acc:NP_001153379]
Alleles
There are 4 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa22365 | Nonsense | Available for shipment | Available now |
sa5866 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa18458 | Nonsense | Available for shipment | Available now |
sa9210 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa22365
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113259 | Nonsense | 199 | 1578 | 1 | 29 |
ENSDART00000132198 | None | None | 396 | None | 10 |
ENSDART00000133636 | None | None | 581 | None | 13 |
Genomic Location (Zv9):
Chromosome 13 (position 39837782)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 13 | 39151883 |
GRCz11 | 13 | 39277773 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATAT[G/A]GGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCA
Long Flanking Sequence:
CACAGAGAAGATTGAAGCTCTAACTGTTTTGATCAAGGAGCTCTCCATTAAACCACAAGAAGAGCGCTTTATCCGTAAAATACAGTCAGTGTTATGGAATCAGTGCATGCCGGTAATACAAACCATCTTGAGATCAGAAGATGGAGGAAAGAATCTGCTCAATGCTGTCTGTGGACTGTTTGCAGTTTGTGTCAACGTTTGTCAGAGCAGCGATGTACCTGAGCAGATCCTTCAAGCTCTTCTACCTGTGCTGATGACGAAAGATGACGCCAACCATGAAGCCAATAGAGCTGACATTGAAGTCGCCATCGAAGCCATCGGAGTTTTGTTATCCAGCATCTCAAATGACAGGTCCATCATCTCCAGGACTCTTTCGAGCACCCTTAACTGTGTTAAACATCTATCTGACTCCATAATCTCCAAAATCATAGTGCGCATCTGGTTCACCATGCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATAT[G/A]GGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCACTCGGGTTTTGTTGTGTCTCACTGCTCTTTCTGACCATCTCTGCTCTTCTGAAACATCTCCAAACCGACCGGACCCTAGAAGGTCTCAGAGGTTCTTTAGGGCGGTTCAAGATGGATTGACGCACAGGGATAGTGTGACCCGCAAACGGGCGCTTTATTTGCTTACCAGGTGTGTGTCACTAGCAGAGATGAAGAAAGAAGAAGTGGTTAGCATTGAGGAACATGAAACAGGTGAGTCGATGTTGGATATCTGTCATATTGTCTGAGGTATTTTGTGATTTTTGTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTCAGATGGACACCAGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTATGCTTTAGTTTTAGAGACTCTAGAGGAAAATCAGGTAAGGAGATTTCATGTGGAGCTTCAAATTGATGAAAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa5866
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113259 | Nonsense | 298 | 1578 | 2 | 29 |
ENSDART00000132198 | None | None | 396 | None | 10 |
ENSDART00000133636 | None | None | 581 | None | 13 |
Genomic Location (Zv9):
Chromosome 13 (position 39838161)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 13 | 39152262 |
GRCz11 | 13 | 39278152 |
KASP Assay ID:
554-3959.1 (used for ordering genotyping assays)
KASP Sequence:
TTTTTRTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTC[A/T]KATGGACACCMGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTAT
Long Flanking Sequence:
ACCCTTAACTGTGTTAAACATCTATCTGACTCCATAATCTCCAAAATCATAGTGCGCATCTGGTTCACCATGCTCAAGTCCTGCGGCGAAGATGCTGAATCGGAGGTCCTGCTTCAGATATGGGATGATTTATTACGGTGGCATCAGAGAGATCAGACAGATACAGCATCCACTCGGGTTTTGTTGTGTCTCACTGCTCTTTCTGACCATCTCTGCTCTTCTGAAACATCTCCAAACCGACCGGACCCTAGAAGGTCTCAGAGGTTCTTTAGGGCGGTTCAAGATGGATTGACGCACAGGGATAGTGTGACCCGCAAACGGGCGCTTTATTTGCTTACCAGGTGTGTGTCACTAGCAGAGATGAAGAAAGAAGAAGTGGTTAGCATTGAGGAACATGAAACAGGTGAGTCGATGTTGGATATCTGTCATATTGTCTGAGGTATTTTGTGATTTTTGTTTGTTAGTAAACTAGATTTTATTTGGCAGATGAAATCCTGTTC[A/T]GATGGACACCAGATAAACAGAAGCTGCTGAGGGAATTCTGGGAAGATTATGCTTTAGTTTTAGAGACTCTAGAGGAAAATCAGGTAAGGAGATTTCATGTGGAGCTTCAAATTGATGAAACAAGACTGACTGTTTACAATATCAAAATATGAATATCAAAACAATATCAAAACTGCTATATTGCTGTTTCTGCTTAAATGTTTATACTTTAGTTTAAAAAAAATACACTTATAGGTTTGTATAGGACAAAAGTGTTGGTCATAATAAATAAATAAATAAATGAAAGTATCTGAATTTTATGTATTTTTACCCTTCAAAATTCAATTCAAACACTTTGTTTATGATTCGGTTTCTCTCACAGTCCACAAACATGTGTTATAGGTGAATTGGGTCATCAAAAATCGGTTATAGTGTGTGTGAGAGAGAATGAGAGTGTATGGGTTAAGGCTGCTCGATTTTGGTAAAAATCTTAATCACGATTATTTTGGTCATAATTGTAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18458
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113259 | Nonsense | 393 | 1578 | 4 | 29 |
ENSDART00000132198 | Nonsense | 9 | 396 | 1 | 10 |
ENSDART00000133636 | None | None | 581 | None | 13 |
Genomic Location (Zv9):
Chromosome 13 (position 39842510)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 13 | 39156611 |
GRCz11 | 13 | 39282501 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGTTCATCACCTGTTACAGCTGAAAGCRCTGCATCAGCCTGCTTTTGCTT[T/A]GGCCTTTTCACAGGTATCCTTYCTTCCTTCCTTTATTTYTTCCATCCACC
Long Flanking Sequence:
TGTCACTGCAAATACACAATGTTGCCAAAAGTTGTGGCGTTTGCATTAACAGATCCAAAATGATAACATGAGGAAAAACTAAAAAAATGTCCATAGAAACATACAAGGGTTAAATCAAAAGTTGATGCATGTGCAGTCCAGATCTTTATTAAAATATAATTTATTTTTTGTTATTGGTGTAGATATTCATTCAAACTGTTTCTTTTTCTTTTTCTCTCATATAAAGATTCATGTGATTCGACCTGTACTCAACAGAATAGACATGCTCGTTGAGACAACCACAACTGACATTCAAGGTTGGTCAGATTCCTTTATTGGGAGCACATGCAGGAATATGAGTTAGTCTGATTGTATCTCTCCATCCTCAGGAGGGCTGTTTTCTCCATCATGGCTGCTGTGTGTGTATCAGCGCATGTTTCACAGCGAGAACAAAGCCGTCATGAAGGAAGGAGTTCATCACCTGTTACAGCTGAAAGCACTGCATCAGCCTGCTTTTGCTT[T/A]GGCCTTTTCACAGGTATCCTTTCTTCCTTCCTTTATTTCTTCCATCCACCCTTTCACCGTCCATCCCCCCCATCCATCATTTTATCCTTCCTTTTATCCTTCCTTCTACCCTTTCATCTTCCATACACTTTCATCATCCATTCACCCTTCCTACTTTTATCTTTTCCTTTCATACATCATGTCATCCGTCCTTTTATCCATCCATCCATCCATCCTTCCTTCCACCTTTTCATCTATCGATCCACTCTTTTATCCATCCTTCCTTCCTTTCATTCTTCCTTTTATCTATCATTTTGTTCATTCATACGTTTTCATCCTTTCCTCCTTCCATCCTTCCTTTTGTCTATCCTTCTTCCTACCATCATTCTTTCCCACCATCCATCTTTTCATTCATCCTTCTTTTTATCCATTCATCCATCCATCCTTCCTTTCACCCTTTCGTCTATAGACCCACCCTTTTATCCATCCTTCCTTTCATCTATTATTTTATTCATATGTTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa9210
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113259 | Nonsense | 477 | 1578 | 7 | 29 |
ENSDART00000132198 | Nonsense | 93 | 396 | 4 | 10 |
ENSDART00000133636 | None | None | 581 | None | 13 |
Genomic Location (Zv9):
Chromosome 13 (position 39844751)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 13 | 39158852 |
GRCz11 | 13 | 39284742 |
KASP Assay ID:
2260-6834.1 (used for ordering genotyping assays)
KASP Sequence:
CGRCAGTGGTGCGCAGTCCCACTGCTCTTTCTGTCCCAGGCCCTGTCCTG[T/A]CTGGCCCCCTGTCCTTTACTGGGAWCTGATGGACTACAGGCRTTCAGGTA
Long Flanking Sequence:
AATATACATATAGCTGATATGCTATCATGTGTTATCTGTAATGATTGTTTGAAAAACACTAGAAAAAAATACACCAAGTATAAATGTGCAGATTGAACAGCTCAAAAAAATTGTTACTGTAATTATTTTACATTCACACTTTTAATGCATGTTTCAAATAATGCAACACAATACAATACATGTATATATCCTAATCCTACCACAATACCATGGTTCAGTTACTGATAATAGAGTAAATCAATGGAATATCTTTCTAACCAGATGTTTTTGGTTTTTTTTTTTTTTTTTTTAACATCAAATATGGTGTACACTGATGCAAGCTGACAGTTAATTGGCTCTTTTCTGAGTTTGTGATTAATATGTGCCTCTGCTTCATAATTCATGCTAATGTTGTTGTTATTGTTGTATTCAGGTTCAGTGTTGCTGCGGCTCATTCAGCGCTTGGGCTCTCGGCAGTGGTGCGCAGTCCCACTGCTCTTTCTGTCCCAGGCCCTGTCCTG[T/A]CTGGCCCCCTGTCCTTTACTGGGATCTGATGGACTACAGGCATTCAGGTACAAACCACTACCTGCTAGACTCTAATAATCCTGAACTGAAGAAGAGATATTACTGTTTTATTTTTAAAAAGGATGGGCATTTTTACGTTTTGCATTATTATTACCATTCACAGCAGGGGTTTTCAAACTTTTCCATGCCACAGACCTAATATGATCATCCATGTGCTAATTACACCCATTGTTAAATGTGAAAACATCTACATATTTATCCTTTATCATTATCAAAAAAACTTCTACTCGTTATAGCAATAATTTATTGGTTTTATTTGATTTATAATTATAGCATAATTGTATTATTTCATCATGTTTTTATTTGGATTTTTAAAATCTATTTTTAATAAATGACTTTAATCTTATTCAGCCATATTTTTGCCATTTAGCAGTTATTATAATTATTAGATTATTTTATATTTATAAAAGTATTTCTTTTATACTGATAAGTTTTTATTA
Associated Phenotype:
Not determined