ZMP
nkx3-1
Ensembl ID:
ZFIN ID:
Description:
Novel homeobox domain containing protein [Source:UniProtKB/TrEMBL;Acc:B0S501]
Human Orthologue:
NKX3-1
Human Description:
NK3 homeobox 1 [Source:HGNC Symbol;Acc:7838]
Mouse Orthologue:
Nkx3-1
Mouse Description:
NK-3 transcription factor, locus 1 (Drosophila) Gene [Source:MGI Symbol;Acc:MGI:97352]
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa41300 | Essential Splice Site, Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa41300
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Essential Splice Site, Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000109908 | Essential Splice Site | 69 | 211 | 3 | 4 |
| ENSDART00000111138 | Splice Site | None | 195 | None | 5 |
| ENSDART00000112136 | Splice Site | None | 191 | None | 4 |
| ENSDART00000146056 | Splice Site | None | 214 | None | 3 |
The following transcripts of ENSDARG00000078280 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 8 (position 52536680)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 8 | 50269884 |
| GRCz11 | 8 | 50258530 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTGTGAGAAAACATGTCATGTTAAAGTTGAATATCGTGTACTTACTTCA[C/A]AGATTCAGCGGATACTTGTCGGACTTCAGAGGGTAAAACTGTGTCGTCGA
Long Flanking Sequence:
AAAACGTAAACTTATTTACTTATTCGGCGATTCATTCCGCTGTGGCGACCTCTGATAAATAAAAGGACTAAGCCGAAGGAAAATTAATGAACGAATAATTTACTTATCCTCCACCGTTTCCAAATTTCTATTGAGTTTTTCAAGATATTTTGAAGAAAGCTGGACTTCCCAAACCATTAACTTCGCATTTGTTTTTCCTATTATGGATGTCAATGGGTTTCCAACATTCTTCAAAATATCTTCTTTGACACTGAAGAGGATTCAGAAACTTATAAAGGTTTATAACCACTTGAGGTTGAGAAAATGTATGTAAATCATTCTGTTATAGGTGAACTGGTTACATTGTCCAGTTACAGATGAACTATCCGAGAAGTTTAACCCGACATTATTTGAGGGCACGCAAGATATTTGTCAAATTCTGATATGTATCTGAAATTAAAAGCCAGGTTTCCTGTGAGAAAACATGTCATGTTAAAGTTGAATATCGTGTACTTACTTCA[C/A]AGATTCAGCGGATACTTGTCGGACTTCAGAGGGTAAAACTGTGTCGTCGACAGAGATGACGGGGGGAGGCGGGAAAAAGAAGCGGTCGCGCGCCGCGTTCACGCACCTGCAGGTATTTATTGCTCTATTCACTAATTAATTGAGTTATTTATATTAATGCAAGTAACAAACCTACAGAAATGGAACCCATAAAGGAAAAAGATAGTAACAATTATGATAGTAATGTAACAGAGCAGATATATAACACATATAGACTAAGGAATGTAAACAATAACAAGGGTCCTAATGTATTTCCTGTTTTACATTTTTAATTTCTATAGCTTCTGAGAATCCAAAAAGGTCCACATATTGATAAATAATGTTATGATAGCTGTTTTAAAGTGAACATACGATTGATTTAACTCTTGTTACAGTTAGGTAACAAACAGGAAATGTACATGGGCCAACTACATTGAGATGGTCTATAAAATTATATATTCCCAGTACTGATTTGCAGCTGG
Associated Phenotype:
Not determined