ZMP
smarca4
Ensembl ID:
ZFIN ID:
Description:
transcription activator BRG1 [Source:RefSeq peptide;Acc:NP_853634]
Human Orthologue:
SMARCA4
Human Description:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [S
Mouse Orthologue:
Smarca4
Mouse Description:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 Ge
Alleles
There are 2 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa12514 | Nonsense | Available for shipment | Available now |
sa19981 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa12514
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000111443 | None | None | 553 | None | 10 |
ENSDART00000115110 | Nonsense | 744 | 1627 | 14 | 33 |
ENSDART00000134514 | Nonsense | 744 | 1627 | 15 | 34 |
Genomic Location (Zv9):
Chromosome 3 (position 19084339)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 3 | 19112701 |
GRCz11 | 3 | 19262441 |
KASP Assay ID:
2259-3284.1 (used for ordering genotyping assays)
KASP Sequence:
GACGATGAATACGGGAACTCTGCATTCATTCGGGGCCTGCAGTCATATTA[T/A]GCTGTGGCCCACGCMGTCACAGAGAAGGTGGAAARRCAATCGAGTCTGCT
Long Flanking Sequence:
ATTTACTTTCATTAGTTAATTTAATTTAAGCTATTTCTATATATGTATGTTTTTTCAATTTACAAATTAATTTTATTTAGCACAAGTTATATCTGATTGTTTAGATATTTTGCAATTTATGACTTGCCATAATTATGTGAATGTAAAATGTAGAATTAACAATGTCTCAAGATTTGTCCATCTTACTGTATGTCCATCTATTTTGATGCTTTAAAGGATGATGAGGAAGAGCCTCAGCCCTCTCAGGCCCCGACAGAGGAGAAGAAGGTGATTCCTGATCCAGACAGCGAGGATGTTTCTGAGGTTGATGCTCGTCACATTATTGAGTGAGTCATTGGATTTAGCCTGGCTACATGAGCTCTTGCTCATTTAATCATTCTGTTGTCATAATTGTAGTTATAAGTGAATGAAATCCATGATGTGTCTTACAGACATGCCAAGCAAGATGTAGACGATGAATACGGGAACTCTGCATTCATTCGGGGCCTGCAGTCATATTA[T/A]GCTGTGGCCCACGCCGTCACAGAGAAGGTGGAAAAGCAATCGAGTCTGCTAGTGAACGGGCAGCTCAAACAATATCAGGTAGAAAAAGATATATTACTCTACAGTTTTTACTTTATTACAAACATGCTCTGTTTTAAAAATGTTTTAAACTAATTCCTGAGGTGCAGCTGATCACAGAGAGTTGGAACAGATCTTTTGGTCTCAGTGTCTTTGCAAATCCTATTCTGTGAACACGTTTATATGCATTGTATGCAACCCCCTCTACCATTCAGTGTGACCTTTTTTTCGACGTAATGCTTTTCTCTGAAGATACGTAACTTTTTCAGTTATTAATTATCATCACCGATCTCAGTTACCACAAAAGATCCCAGAAAATACTAAGATATGGATATAAAAACGAAAAATACACAGAGAGATTCTTGTTAATCTGGTGGCTTGTGCTTATTGCTTTCGTTCCGTCCACAGATTAAAGGTCTGGAGTGGCTGGTGTCTCTGTATAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa19981
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000111443 | None | None | 553 | None | 10 |
ENSDART00000115110 | Essential Splice Site | 1140 | 1627 | 23 | 33 |
ENSDART00000134514 | Essential Splice Site | 1140 | 1627 | 24 | 34 |
Genomic Location (Zv9):
Chromosome 3 (position 19089867)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 3 | 19118229 |
GRCz11 | 3 | 19267969 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATGGAGGACTACTTTGCTTACCGCAACTTCAAATACCTCCGCTTAGACGG[T/C]AAGTCATGTTCCTTGTTATTTAAGGTCATTAATAGTTCATTTAAAAGCAT
Long Flanking Sequence:
TCATCTTTCTGTGTGTTACAGGGCAAAGGGGGCACTAAGACACTGATGAACACTATTATGCAGCTGAGGAAGATCTGTAACCACCCGTACATGTTTCAGCACATTGAGGTGATCATTTACTCACACATACTCTATTTATGAATTCATTTATATCCTGTTTGTTTATCTGTTAGTAATGCATGCATGCGTGTTATCTGTTTTGCAGGAATCTTTCTCTGAGCACCTGGGCTTCACTGGAGGCATCGTTCAGGGGTGAGCAGAACTACTTCTCTTATAATAAGAACACCTTTGTATTTTATTTGCATCTCATCATGTCTTCTGGTGTTTTACAGGTCTGATTTGTACCGTGCCTCTGGTAAATTTGAGCTGCTGGACCGCATTCTGCCAAAGCTCCGCGCCACCAACCACAAAGTGCTGCTCTTTTGTCAGATGACCACACTCATGACCATCATGGAGGACTACTTTGCTTACCGCAACTTCAAATACCTCCGCTTAGACGG[T/C]AAGTCATGTTCCTTGTTATTTAAGGTCATTAATAGTTCATTTAAAAGCATCACAGGGCCACCGCAGGTCCTTAAAGTCTTCAATTAAGTTTTCTTTTCAAAGGACCTTAAAGTCCACATGAACCAGAAGCAGAGGCTGTTAATGTCATTTCATTTTATTTTTTTCTGTATTGTGACGCAATTCCTAGAGAAACAAAATATTAAATGAAAAACAAGTGAGCATGGCTTTTTGTTTCTACTCTGAGCTGACTAGATGTGGTAAAGTAGCCATTTTATTCAGGAAGATCTGGAAAAGGGTTTTAGGAGAGTTTTACAAACTAACGCCCGACTCACTCAGTCATCAGTGTCAACGCATCTCGTTCACTTTGAATGGGTGACGTGAAGCATTGCCGAACTTAATTATGGATCCATCGCCGCTGCTTCAGTGGCATTGCTTGCTGCAGGAGTTTGGAATTTCTCAACTTTTCAATCACCAAGCTTCGGTCTATCAGATAATTTTAT
Associated Phenotype:
Not determined