Busch Lab

ZMP

LOC560874

Ensembl ID:
ENSDARG00000076847
Human Orthologue:
TNRC6C
Human Description:
trinucleotide repeat containing 6C [Source:HGNC Symbol;Acc:29318]
Mouse Orthologue:
Tnrc6c
Mouse Description:
trinucleotide repeat containing 6C Gene [Source:MGI Symbol;Acc:MGI:2443265]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa6904 Nonsense Mutation detected in F1 DNA Not yet available
sa1472 Nonsense Available for shipment Available now
sa2126 Nonsense F2 line generated Not yet available

Mutation Details

Allele Name:
sa6904
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113726 Nonsense 428 1817 4 21
Genomic Location (Zv9):
Chromosome 3 (position 34363737)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 34148933
GRCz11 3 34278441
KASP Assay ID:
554-5289.1 (used for ordering genotyping assays)
KASP Sequence:
CAATCCCAAGGAGGATCCTCGCAGGTCAACGGGGATAGGGAACCTATTTG[G/A]GGTAATGGAGATGCCAAGTCTGGTGGTGGCTCAAAAGACTCTGATTGGGA
Long Flanking Sequence:
AGCACATCAGTGGGAGCCAGGGGTTGGGGCTCCTCTAACTTTAACTTGAACTTAAACCCTAATGCCAACCCCTCTGCCTGGCCAGTTCTGGGGCATGAAGGGTCTGGCATGGGTGGCGGCAGCTCAGGGGGAAGCAACCCTCCTCCTAATCTCTGTAGCCCACCGGGCACTCTGCCCAGCCAGGGCTCTAGCAACAGTGGCAGTATAGGTGGTCCCAATGGAAATTCTGCAAGTAATGGTGGCAGTGGCAATGGCAGTACCACATGGGGTAGTATTATGCCCAGTGACTCCTCAGAGCCACACTCCACCCCATCCACGAATGTGTCTTTCAGCTCTGAACCTCAGAACCTTAACACTGATGGACCAAATCACACTAAGCAGGAGCCCAGAAGTCCTGGTCACAGCCTGTCAAACTGGGGGGTTGGACCTCCAGGCATGGGCTCATTTGTTCAATCCCAAGGAGGATCCTCGCAGGTCAACGGGGATAGGGAACCTATTTG[G/A]GGTAATGGAGATGCCAAGTCTGGTGGTGGCTCAAAAGACTCTGATTGGGACTCAGGGCACTGGGTACAAGGAGGGGCCTCGGGCACTTCTGGCTGGGGACAAGCTGCCTCATCTGGTGACTGGGGTAAGCATTCCAACATTGACACCAAAGGATGGAATTCTTCAGGCTCTCCCACCCAAGAACAGCAGCTAAATTCTTGGGTCCGTGGGCCCAATGCCCCAGCTAGTGAGGGAAGTAGTGACAGCATGGAATGCCATCATCGCAGGAGGGATCGATCATCAAGAGATGAGACTTCTCCTATTCTGCCTGCCCAGGATATGGATCCTCGGGTTTTGTGCAACACAGGCTGGGGACAAACACCTGTGCGGCAGCATACTGCTTGGGAAACCGAAGAAGCTGCTCGCTCCAACCGCAAGAATGACATTGGAACTGAGGCCTGGGGCTCGTCTTCAAATGCAGCCAATGTAGGACCAACATCTAATTCTGGCAGTGCCAACCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1472
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113726 Nonsense 664 1817 4 21
Genomic Location (Zv9):
Chromosome 3 (position 34363031)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 34148227
GRCz11 3 34277735
KASP Assay ID:
554-1397.1 (used for ordering genotyping assays)
KASP Sequence:
GTCCTGGAGATTGGGGCAGCACCTCAGCTGGAGGCCCAGGAGGCAACCTG[C/T]AGAAAAGTGGTCAGACTTGGGGWTCGGAAGAGAAGTCTCCGACCTGGGAA
Long Flanking Sequence:
GTGGGCCCAATGCCCCAGCTAGTGAGGGAAGTAGTGACAGCATGGAATGCCATCATCGCAGGAGGGATCGATCATCAAGAGATGAGACTTCTCCTATTCTGCCTGCCCAGGATATGGATCCTCGGGTTTTGTGCAACACAGGCTGGGGACAAACACCTGTGCGGCAGCATACTGCTTGGGAAACCGAAGAAGCTGCTCGCTCCAACCGCAAGAATGACATTGGAACTGAGGCCTGGGGCTCGTCTTCAAATGCAGCCAATGTAGGACCAACATCTAATTCTGGCAGTGCCAACCCAAACTCAGGCACTACATCCAGACCTGACTCTGGAGGCAAGAGTGAAGGCCCCTGCCCTAGTACTGGTGCTGCACCTGGATGGGGCACAGCAATGTCATCACCCCAGGCTGGCTCTGGTTGGGCAGATACAACCAGCAACAAGAAACCTTCAATTGGTCCTGGAGATTGGGGCAGCACCTCAGCTGGAGGCCCAGGAGGCAACCTG[C/T]AGAAAAGTGGTCAGACTTGGGGTTCGGAAGAGAAGTCTCCGACCTGGGAAGACAGTCACGCTAAAGCCAAACCACAGTGCTGGGTTGAGGGACCCAAATCTCACGGGTGGGGTAATGGACCTGGTGGAGAAAGTGGTTCTGGAGGAGAATGGGGTGAACCTGGAGATGGAAAGAAAAATGGTCCCTCCAGCTCTACCTGGGAGGGAGAGGGTACAGGCTTAAATGAGGGATCCAGAGGATGGACCAAGCCTTCTGCTGGAGTAGGAGGAAACTGGGGAGAAGCACAACGCCCCAGTGTGCCACCACAAGGATGGAATAACAAGCCTCAGGAGGGTACCAATGGCAATAGCACCAGTGGAAGCATGGGTTCTTGGGGAGGTCCTAGCTCGGTAAAGCAGAGTTGCTCTGGATGGAATGGAGGAAATGGTGGAGGTGTTAAACCTGACCACACTGGAGACCCCACTGGATGGGAGGAGCCCTCTCCACCCTCCATTCGCCGT
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa2126
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113726 Nonsense 1640 1817 19 21
Genomic Location (Zv9):
Chromosome 3 (position 34351066)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 34136262
GRCz11 3 34265770
KASP Assay ID:
554-3356.1 (used for ordering genotyping assays)
KASP Sequence:
TACCACATGGAGTACAGACAGCTCCAGCAGGAGCACTAGCTGGCTGGTTT[T/A]GAGAAACCTCACACCTCAGGTATCGTTAAGGCTACTGTTAAGTNNNTAAG
Long Flanking Sequence:
AATACTTTTCCAGCATGAACAAGATTGGCAGGCATCTGCTTTATAGTATATATCCTTGGGGCGATGTAACTGGCTAACATTTGTGTTACAATTCAAAGTGTTTTCTGAAATTACCCAGCAGGCCCCTGACCAGTCCTCATGTTTATGTCAAAAGTCACATGATCTATGCAGTGCAACTAGTCGACATCAATCAAAGAGCATGATGGCAGAGCATTAAAGTTGACCTGTAGATCAGTAAACCAGTCTCTGCAACCCCTACTATAAAACCCAATGCCGCTGTTTTCCTTAACGAAAAAGGGATTGGTAGCCAGTAGTTTCTTAACACACGAAAAATAGAGTGAAAGAATATTAAAGTTCTGGGTATCAAAACACAGTTGGGTGCTTCATGGTTAAATTTGATATGTTACTGTGGTATAAATGTTTTAAGCATTCTTTCTCTCTCCAAGTAGGTACCACATGGAGTACAGACAGCTCCAGCAGGAGCACTAGCTGGCTGGTTT[T/A]GAGAAACCTCACACCTCAGGTATCGTTAAGGCTACTGTTAAGTAGTTAAGTTATTATCTTCATTCTTGGTTAATCGTGTACATTGTTATATTTCTGCTCTTTCTCTTCTGTGTTGTTTAGATTGATGGTTCAACACTCCGAACACTGTGCATGCAGCACGGCCCGCTCATCACATTCCATCTCAACCTGACACAGGGCAATGCTGTGGTCCGCTACAGTTCTAAAGAGGAGGCTGCCAAAGCCCAGAAATCCCTACACATGTGCGTCAATCTTTCCATCATTGTTTTTAAGCGGTTGTTCTCAGCTGTATGATCGCTGTATGATCTCTAAATGCTTTGCTTTCAGGTGTGTTCTGGGAAACACCACTATACTGGCAGAGTTTGCTGGAGAAGAGGAGGTGAACCGCTTCTTTGCACAGGGTCAGTCCCTAACACCCACCACCAGCTGGCAGGCCAACCCTGGCACCAATCAAACACGGCTGGGAGGCGGAGGGACGGCGG
Associated Phenotype:
Not determined