ZMP

si:dkey-211m23.2

Ensembl ID:

ENSDARG00000076321

ZFIN ID:

ZDB-GENE-030131-4444

Description:

collagen type XXVIII alpha 1 a [Source:RefSeq peptide;Acc:NP_001153314]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa9059	Nonsense	Mutation detected in F1 DNA	Not yet available
sa25439	Nonsense	Mutation detected in F1 DNA	Not yet available
sa17519	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa9059

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000115121	Nonsense	103	1208	2	35
ENSDART00000134185	None	None	67	None	9
ENSDART00000140185	Nonsense	103	1192	3	36

Genomic Location (Zv9):

Chromosome 9 (position 49347746)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	48662816
GRCz11	9	48360211

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TATAGAAGGCCTCCAGAGYATCCGCTTGGACACAGGCCGCAAACTCAGCT[G/A]GAGAGCRGCCCTGCTCCAGTACAGCAGTCACGTCATCATCGAGCAAACCC

Long Flanking Sequence:

TGCCCAGACTGTATCGTTGAGGTTTTTTTATTTTTATTTAAAGCATTTTCTCAAAATATGTTTAAAAATAATGTCACCAAAAATCATTCTGCTAGCTGAAACAGAATAGGTTATGGCCAAATTAAGACTCAAAATCCCCCTAGACTGGATAATAAAATCCCCAACAGTATATAAGGGTTAACCACTCCAAGAGGTGCTGAATCATCATGATAATTCAGTAGCGGCCTCCAATGAGTATAAAACCTATTGGATGAGCCTCTAAGAGAGAACTTAATCTTCTCCCGTTTCAAAACTTTCTGATAGTCCATCAGTAACACTTTTTCTCATTTTCTCTTACTCTGTGTCAGCCATCTTGGACGAGGACTGCAGCCTTGAGTTGGCTTTTCTCTTGGACAGCTCCGAGACGGCCAAGGACAACCATCAGCAGGAGAAAAAGTTCACGATGGACATTATAGAAGGCCTCCAGAGCATCCGCTTGGACACAGGCCGCAAACTCAGCT[G/A]GAGAGCGGCCCTGCTCCAGTACAGCAGTCACGTCATCATCGAGCAAACCCTAAAACAGTGGAAAGGCACTGAGAACTTCAAGAGCAGCATCGCACCGATGGCTTACATCGGCCATGGCACTTACACAACCTACGCCATCACCAACATGACCAAGATATTTGTGGAAGAATCCAGCCCGGAACGAATCAAGATCGCCCTGCTCCTCACAGATGGCTTCTTTCATCCCAGAAACCCTGATATCTTCTCTGCCATGGCGGATGCAAAGAACCAGGGCGTGAAGGTGTTCACGATTGGTATCACTCGTACTGCCAACGACCCTGTGAACGCTGCAAACCTGAGGCTGCTGTCCAGTACACCGGCCTCCAGATTCCTCTATAATCTACAAGACACAAACGTCATGGAAAAAGTCATTACTCAGATTGTAAGTACAAGCCAAGCCAATCACAAATCTTGTCCTCATATTGAATAGTTAGTTGACTTTATTAGTACACATAATTAGA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa25439

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000115121	Nonsense	273	1208	5	35
ENSDART00000134185	None	None	67	5	9
ENSDART00000140185	Nonsense	273	1192	6	36

Genomic Location (Zv9):

Chromosome 9 (position 49331799)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	48646869
GRCz11	9	48344264

KASP Assay ID:

554-7438.1 (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

ATTGATTGACTTCCTACGTTTTTTTTTTTTTTTTTACCCTGCAGGGAAAG[A/T]AGGGTCGTCCAGGTGAGGACGGAACTCCTGGGGCCAAAGGCCAAAAGGTC

Long Flanking Sequence:

CTAAACCTAAATACATGGCTCATTGGTTAGCACTGTCACCTCACAGCAAGAAGGTCGCTGGTTCAAGTCTCGGCTGGGTCAGTTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTTGGCGTGGGTTTCCTCTGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACAAGTGGTATAGGTGAAGTGAAAATACTAAATTAGCCATAGTGTATATGTGTGTGAATAAGTGTGTATGGGTTTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCATCCGCTGTTCATTCTGCTTTGGCGACTCCTGATGAATAAAGGAACTAAACCGAAGAAAAATAAATGAATGAATGAATGAATGAACCAATGAATGAAAGGTTAGCTCTACAGGACTAGTTAACAGTTAGAAATCAGACATATAAGCTCATTTTTCAGATGTTGTGCAGATATTGCAAGTTAAAATTGATTGACTTCCTACGTTTTTTTTTTTTTTTTTACCCTGCAGGGAAAG[A/T]AGGGTCGTCCAGGTGAGGACGGAACTCCTGGGGCCAAAGGCCAAAAGGTCACCATTTTATCTTACTACAGCTGTCTCTCTGTCACTCTCTCTGCTTGCATTCGTGAATGTACACTCTCAGAAATAAAGGTACGAGAGCTGTCACTGGGGTGGTATCTTTTTAAAAGCTACAAATTTGTACCTAAGGATTCCTATTAATACCTCAAGGGTACATAATAGTACCTAAAAAGTACAAAAGTGTCCCTCTTAAAATGTTTAGGTACAAATATTTAAGCTTTTGAGGTACCAATATGGACCCTTTCAGTACAGATGTGTAACTTTTGAAAAGGTACCAACCCAGCGACAGCTCTACTGGCTTTATTTCCGAGAGTGTACAAGGGAAATGTGTTGAGATGCTGATTGATGTTGTGTATATTTATATTTCATATTTCTGCTTTAAATGTCATATGCATTTACTCAGATTGAGCAGAATGACAGATGTGTTTCGTGCTCTTGTTAGGG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa17519

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000115121	Nonsense	1056	1208	32	35
ENSDART00000134185	None	None	67	None	9
ENSDART00000140185	Nonsense	1040	1192	33	36

Genomic Location (Zv9):

Chromosome 9 (position 49290272)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	48605342
GRCz11	9	48302737

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TTTATGGAAGCAGATTTCAGGAGTCACTAGACAGATCGCAGAGTCACACC[A/T]GAGGCAGAGGACACAGTATACCATTACCCATCAGCCCCGGGCCTCTCAAA

Long Flanking Sequence:

TAAAACTGCTTATTTAAAATGAACTGAAACAACACAATTCTTATTTTTTCAGACAACATTGTTTTATGTGCAATCCACTTAAACTTGTATAAACAATTAACTTAATCGATTTGTGTTGGGACAGCATGAATGTATTGTGTGGAACCCTGCTTTTTTCATTCATTCATTCATTCATTCATTTTCCTTCGGCTTAGTCCCTTATTTATCAGGGCTTGCCACAGCGGAATCAACCGCCAACTATTCCAGCATTTTTTACAGTGTAATCAACTAACCGCATCTTGCTCTGTGTTTGGTTTGTTTTTGCAGCTCTGGAGTCTAAACTAGTTAGCCAGTTCTGTGAGGATGAGAACGGAGCCCTTTACTTTAACCGGATCACCAACGGCTTAAACGGAAACAATGGATTTGGCTACAGTAATGGTCAAGAGGACATTTCCTCATACGGCAACACCGTTTATGGAAGCAGATTTCAGGAGTCACTAGACAGATCGCAGAGTCACACC[A/T]GAGGCAGAGGACACAGTATACCATTACCCATCAGCCCCGGGCCTCTCAAACCACAGGTCAGAAAACATCACTACACTGCGGAAAATCTAATTATTAAATCAAGATGCATTTTACAGACAAGTAAAAAATATAGTTTTTTTCTTTCAAGCTATTTTTTAAAATGTTTGCTGCTTGATCAAACTGAAGTGAAACCCACGTCAACACGAGGAGAGCATGCAAACTCCACACAGAAATGCCTACTGGCCCAGCCAGGACTCGAACCAGCGAGCTTCTAGCTGTGAGGCAACAGTGCTAACCACTGAGCCACTGTATCGCCTAATTTCATCTGATGTCTACCAGAAGTTATGTAAAGAGAGAAAACATCAATCATGTCAAAGTTGTCAGCAAATGCTATTACAGAACAAGAAAATAAATATCTATAAAACCCTCATTTAATTTAATAATGAGAATTGATCCCTAAAGTGTTCTCAAATGTACTAATTTTGATTGACTGGGATGAT

Associated Phenotype:

Not determined