Busch Lab

ZMP

col19a1

Ensembl ID:
ENSDARG00000076163
ZFIN ID:
ZDB-GENE-090312-196
Description:
Novel protein similar to vertebrate collagen family [Source:UniProtKB/TrEMBL;Acc:B8A4T5]
Human Orthologue:
COL19A1
Human Description:
collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:2196]
Mouse Orthologue:
Col19a1
Mouse Description:
collagen, type XIX, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1095415]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa42271 Nonsense Mutation detected in F1 DNA Not yet available
sa42272 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa42273 Nonsense Mutation detected in F1 DNA Not yet available
sa22363 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa42271
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076436 Nonsense 96 488 10 34
ENSDART00000145979 Nonsense 127 617 8 30
Genomic Location (Zv9):
Chromosome 13 (position 39598869)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 38912970
GRCz11 13 39038860
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCAGGGCGATGCAGGCGGAGCGCCGGGGCCAGCAGGACCCCCTGGCCTC[A/T]AGGGTGAGCCTGGTGAGCCCTGCTCTGTCGGACTTTGCGGTGGGGTAGGT
Long Flanking Sequence:
TTTTTGCTATAATTATATTTTCAAATAATTATTTTGATTTTTATGTTTCTGAATAAAATATTTCAAATGTCCTCCAGTAATAATACTTAATATCAAATAAATGATAAAATAATAATTATTTATTTAGACTGCTTTTATATTATAAAAGTCAAAATTGATTCAAAATAATGACAGATTGAGATTGCACAGCCATTACTGCGTCTATAAAAAGGTGAGTGAGTTCAGCGTGGAGAGCTCTTTTTTTCTGTTGTCTCACCGCTGAAGCTGCGTGAGGTGACTCCAGGTTGGTGGCATTTGGCCCAGATGTCTGTGATATTTACGTCCAGCTCTTGTTGTGTATGTGCGTGTGGAGAGAAGCATGTGTGTGTGCATTTGTGCACTTCTCCACAACCTGTCAGATAACAAGCCGGAGGTGACAGCGCCTCTAAATGCCAGCTGTCGTTGTGTGTTTGCAGGGCGATGCAGGCGGAGCGCCGGGGCCAGCAGGACCCCCTGGCCTC[A/T]AGGGTGAGCCTGGTGAGCCCTGCTCTGTCGGACTTTGCGGTGGGGTAGGTACAAAACACCATTCATGCCTTTCTCTTTAACTTCAACTTTAGTGTTGTCACAGAACTAGAATTTCAATGGTCGATTCCAGTTGGTCTTTTCAAAACAGTACAGGTGTACTGAATTGATTCTTTAAAGACCCACAAAATGATGTTGGCTGACATTAAAGAACAGCTAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGCCTCTCTGTTTATTTTCCCCCCAATTTCTGTTTAAAGGACACATTATCACATTTCTAAACATAATAGTTTTAATAACGCATTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTTTCAAGACACTTTTATACAGCTCAGGCCGTACTCACACTAGGTACAGTTGCCTCGAACCGGGCCAAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42272
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076436 Essential Splice Site 110 488 10 34
ENSDART00000145979 Essential Splice Site 141 617 8 30
Genomic Location (Zv9):
Chromosome 13 (position 39598915)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 38913016
GRCz11 13 39038906
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTCAAGGGTGAGCCTGGTGAGCCCTGCTCTGTCGGACTTTGCGGTGGGG[T/C]AGGTACAAAACACCATTCATGCCTTTCTCTTTAACTTCAACTTTAGTGTT
Long Flanking Sequence:
TTCTGAATAAAATATTTCAAATGTCCTCCAGTAATAATACTTAATATCAAATAAATGATAAAATAATAATTATTTATTTAGACTGCTTTTATATTATAAAAGTCAAAATTGATTCAAAATAATGACAGATTGAGATTGCACAGCCATTACTGCGTCTATAAAAAGGTGAGTGAGTTCAGCGTGGAGAGCTCTTTTTTTCTGTTGTCTCACCGCTGAAGCTGCGTGAGGTGACTCCAGGTTGGTGGCATTTGGCCCAGATGTCTGTGATATTTACGTCCAGCTCTTGTTGTGTATGTGCGTGTGGAGAGAAGCATGTGTGTGTGCATTTGTGCACTTCTCCACAACCTGTCAGATAACAAGCCGGAGGTGACAGCGCCTCTAAATGCCAGCTGTCGTTGTGTGTTTGCAGGGCGATGCAGGCGGAGCGCCGGGGCCAGCAGGACCCCCTGGCCTCAAGGGTGAGCCTGGTGAGCCCTGCTCTGTCGGACTTTGCGGTGGGG[T/C]AGGTACAAAACACCATTCATGCCTTTCTCTTTAACTTCAACTTTAGTGTTGTCACAGAACTAGAATTTCAATGGTCGATTCCAGTTGGTCTTTTCAAAACAGTACAGGTGTACTGAATTGATTCTTTAAAGACCCACAAAATGATGTTGGCTGACATTAAAGAACAGCTAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGCCTCTCTGTTTATTTTCCCCCCAATTTCTGTTTAAAGGACACATTATCACATTTCTAAACATAATAGTTTTAATAACGCATTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTTTCAAGACACTTTTATACAGCTCAGGCCGTACTCACACTAGGTACAGTTGCCTCGAACCGGGCCAAAGCACGCTTGTCCCCCCTCCCGTCTCCCCCGACGGCCCGTGCTCACAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42273
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076436 None None 488 None 34
ENSDART00000145979 Nonsense 351 617 20 30
Genomic Location (Zv9):
Chromosome 13 (position 39619385)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 38933486
GRCz11 13 39059376
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCTAAAAACCTTGTTTGTTTTGTTTTGTTTGTTTAAGGGTGCTCCATA[T/A]TCAGAGGGCAACGGGATGAGCAGTATCTATAAGCTTCAGGTAAAGCCACG
Long Flanking Sequence:
ATGGATTACATCTTCCAACAAAAATGAAGAAAAATGGCGCTCATAAACAATCATAAAGCCCTCATGCTGCAGGAATGAGGAGGTCTGCTGAAGGCGCACAGCTGTCGTGAAGTGAGGAGTTTGCGTCTTTAATAAACGACGGCAGTTTGCGTTCACTGAACAGTAATAATTAATAAATCTATATGAAACAGTCCCTTAAAAGTCACGTCTCGCTTTCAGTTTCGGGCTTTGGCGCATTTTGCACTCACACACAAGCGTACCCCGCCAAAGCCCAAATGAACCGGGCTCAGGCACATCTCTTCTAACCGGGCCAGGGCCGGCCAAGTGAACCCTGCTTGAGCCCGATTCAGCGCACTCACACTTCTCAAACGATCCGGGAAACGGGCCTGGGCACGGTACGGATGGCATAGTGTGAGTAGGCCCTTATTTTGACCTGAGCCAGTGTGCAACCACCTAAAAACCTTGTTTGTTTTGTTTTGTTTGTTTAAGGGTGCTCCATA[T/A]TCAGAGGGCAACGGGATGAGCAGTATCTATAAGCTTCAGGTAAAGCCACGTCATTCAAAACTTCCAGTATGTGATGACATTTATTTATTGTCTCTATATTTAAAACCTGTGTTAATTTTTGCAGAACGGAGCAGCTAACGGAGGTCAACCCGGACCACCAGGGCCTCCGGTATGTGTTACATTTTTTAAATGATATCCCACATAAAACAGTTGTTTTGAACTTCACCCACCGCAGGGACACTTTTAATGAAGTTTAAATGTCAATACACAAAGAAGCGCCATTGATTCCAGAATCAGTATTCGCTTTAGCTGCTGTCTGCCGCTGATTTGAAGTTTTATCCTGTGTGATGATGTGAAGGGCGGATCACGGCCACACAGACACAAATCTGAAACTCAGACAATGACAGCAGCCCAAAGGGAGAAGGCCAAAACAAACCCATTACGCATAGTCAACAAAGTAACTGTTTGTATAAAAAAAAATAAAAAAACCGGTTAATTGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22363
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076436 Nonsense 395 488 30 34
ENSDART00000145979 None None 617 None 30
Genomic Location (Zv9):
Chromosome 13 (position 39633719)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 38947820
GRCz11 13 39073710
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGACTGATGATGTCCCATTTTGGCTCTTTGTCTTTGCACACAGGGAGAA[C/T]GAGGGCCTGTGGGAGAGACTGGCTTCCCTGGACCTGAAGGGCCTCCTGGA
Long Flanking Sequence:
ACTAAATTATGTGAATGAGATCACACAAATTCACACGAATTAGCCACTAAATCCAAAAATTATGAATTGCCGTGAGATAGCATTGAGAATAGACTTATACACTTTAAAATACAGTATGTGCTATGTTCAACAGTCCTTGTCTGCAGAGTAACAGAAGGCTACAGTTCATTGAAGCAGCTGCTGGTTCAGTAGCCTACCACAAGATAAATGTTTTATATTAAGCATAAATCTTTGGATGAAATCTGTACATGCGGTAGCTGGTATAGATAGACAGCAGGTTTGAGATGTAACTCTGAGGTGTAACTCTGTCTCTCCGTCTCATTGCTGTGACTGATAGGGAAAGCCTGGACCGCGTGGTGAGACAGGGATCCCTGGAGAGCCGGTGAGATTTGCTTTGTTGCTTGTTAGCAGCTGTCAGTCATACGGCAGGGTTTGGCAATAGAATGATGCGAGACTGATGATGTCCCATTTTGGCTCTTTGTCTTTGCACACAGGGAGAA[C/T]GAGGGCCTGTGGGAGAGACTGGCTTCCCTGGACCTGAAGGGCCTCCTGGAGCTCCTGTAAGCAATCGCAGCATTTGCTACACTTGTACATCTACAGCGAACGCTAATGACAAACCTGAAGGAAATAAAACTCACTGCAAATTTGCTCTAACTATGTTTCAGTGTAGAGTGACGAAGAATGGAAGTTAACATGGCAGTTTTGTTTTAAAAAGTCACTACAATTTTGAGATAATGTAACACATAGACATAAGATATAGTCAGTGCAGTAGTCAACATTTAAAGTGGTTTAAAACAGTGCTTCTCAACCCCATTCCTGGAGGACCACCGACATTCAACATAGGCTCATTCTGAAAATGCACCCCTATATATTTTTGGAGATCGCAAATTATGTAGCCAGGAGTACGTATGGCTGCATTTCGTCTTTAAAACAAACGCTACAGGGTGGTATGCAGGCCCGGATTGGCTAATCGGGAGGACCGGGAGAATTCCCGGTGGGCCGGT
Associated Phenotype:
Not determined