Busch Lab

ZMP

ENSDARG00000075992

Ensembl ID:
ENSDARG00000075992
Human Orthologue:
GIN1
Human Description:
gypsy retrotransposon integrase 1 [Source:HGNC Symbol;Acc:25959]
Mouse Orthologue:
Gin1
Mouse Description:
gypsy retrotransposon integrase 1 Gene [Source:MGI Symbol;Acc:MGI:2182036]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa31352 Nonsense Mutation detected in F1 DNA Not yet available
sa33289 Nonsense Mutation detected in F1 DNA Not yet available
sa8491 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa2125 Nonsense F2 line generated Not yet available

Mutation Details

Allele Name:
sa31352
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109820 Nonsense 16 299 1 6
ENSDART00000126813 None None 280 None 8
Genomic Location (Zv9):
Chromosome 3 (position 43436273)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 42473207
GRCz11 3 43179222
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTAGTCAAATCTTGCTGCACTACCAACGGGTCATGGAGGGTGACAAATA[T/G]AACTCATTGAAACAGTTTCTTCTTTTTGGAGAATATCCAAAAAATGCAAA
Long Flanking Sequence:
TTTTAAAGGTGACCATAAACAGCGTTGTTTTCGCATTTACTGTTTCTGATTAAGCAAGCGAAGGTGATATCCTGCAAACATTTGAAGAGAAATTATGGCTCTTCATTCATTAAACGTGTATTCCCGTTACTAATAATAATAATTTTACATAGCCTATCTTTGTGGTATTAGTAGTGTGTATAAACTGAAGAAAAAAAATCTGTATAAAATATGTGAATAATAATACAAATAAAAAGACATATTTAAACACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATTTATTTATTTTTACAAGATTTCCTAATAGGTACGATACGTAGATATCCTGCACACGTAGATCACGTGGGTTGTTCAGCATCCATTATTGAAATTGCGCGCAATTATTTGATTTAGTCAAATCTTGCTGCACTACCAACGGGTCATGGAGGGTGACAAATA[T/G]AACTCATTGAAACAGTTTCTTCTTTTTGGAGAATATCCAAAAAATGCAAACAAACAGCAGCGTTTTGTATTGAAACGACGAGCTGGGAAGTTCTGTATGATAGGTAAGTCAAATAAAAGCGCACACATCAAAGATAACTTAGGCCCCATTAGTTAACTCTTCTTTTAGCACTGTAAAAACAAATATAACATTTTAATTAAAAAAAATGCAAAAAGACAACAAAACATTGTAAATCGCAATTAAAATTTTGGTTTTATTTCAGACCAATTTAACAATATAAAATATTGCAGAGTTTAATAAGATTTTTTTAAATAGTGTTGGCATGTCTTTCCACCAAAAATTATGTTAAGAAGACTGGTTTCCATCCATCCTTATGATGCGTTTCCACTGGGACCTTGGTAGCGGAATGTTTTCAATTAATTCATATGGAAGTTAAGCAGAAAACCCAGTCTTCACCATCACGTTCTTAGAAGCAGCAACAGTGAAAGCAGAAAGTTTCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33289
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109820 Nonsense 40 299 1 6
ENSDART00000126813 None None 280 None 8
Genomic Location (Zv9):
Chromosome 3 (position 43436202)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 42473278
GRCz11 3 43179293
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTTTTTGGAGAATATCCAAAAAATGCAAACAAACAGCAGCGTTTTGTAT[T/A]GAAACGACGAGCTGGGAAGTTCTGTATGATAGGTAAGTCAAATAAAAGCG
Long Flanking Sequence:
CTGCAAACATTTGAAGAGAAATTATGGCTCTTCATTCATTAAACGTGTATTCCCGTTACTAATAATAATAATTTTACATAGCCTATCTTTGTGGTATTAGTAGTGTGTATAAACTGAAGAAAAAAAATCTGTATAAAATATGTGAATAATAATACAAATAAAAAGACATATTTAAACACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATTTATTTATTTTTACAAGATTTCCTAATAGGTACGATACGTAGATATCCTGCACACGTAGATCACGTGGGTTGTTCAGCATCCATTATTGAAATTGCGCGCAATTATTTGATTTAGTCAAATCTTGCTGCACTACCAACGGGTCATGGAGGGTGACAAATATAACTCATTGAAACAGTTTCTTCTTTTTGGAGAATATCCAAAAAATGCAAACAAACAGCAGCGTTTTGTAT[T/A]GAAACGACGAGCTGGGAAGTTCTGTATGATAGGTAAGTCAAATAAAAGCGCACACATCAAAGATAACTTAGGCCCCATTAGTTAACTCTTCTTTTAGCACTGTAAAAACAAATATAACATTTTAATTAAAAAAAATGCAAAAAGACAACAAAACATTGTAAATCGCAATTAAAATTTTGGTTTTATTTCAGACCAATTTAACAATATAAAATATTGCAGAGTTTAATAAGATTTTTTTAAATAGTGTTGGCATGTCTTTCCACCAAAAATTATGTTAAGAAGACTGGTTTCCATCCATCCTTATGATGCGTTTCCACTGGGACCTTGGTAGCGGAATGTTTTCAATTAATTCATATGGAAGTTAAGCAGAAAACCCAGTCTTCACCATCACGTTCTTAGAAGCAGCAACAGTGAAAGCAGAAAGTTTCCTGATGAAACTTGTGTAAGGGTGTTTTTTCCGCCAAGCGAAACGCAACACCAGCTGAAGCACTGTGCAAATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8491
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109820 Essential Splice Site 51 299 None 6
ENSDART00000126813 None 3 280 1 8
Genomic Location (Zv9):
Chromosome 3 (position 43433267)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 42476213
GRCz11 3 43182228
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATATTGCTTAATACTGTTTTTATAAGATCTTAATACTTTAATTTRTTTTC[A/C]GAGGATGAATTGTTTTACATAAAAAACAATGCCCACAAAGAACAAAAATG
Long Flanking Sequence:
TGTCACTGCTCTAAATATATATGTTATATATATGTTATTTATACACAAAAGACTGGCTTGTTTTGTTTTCTAGTAAATTTGCTTACTACGTTCATTTTATTTATTTATTTATTTTTTCAAGCTTAGAGTGCTTACAGATTTTCTTTTATGTATATTTCAGATATGACTGTTTAACTTTGTTGGCTAGTTTTAGATTTTGGAATGAAAGCAAAACCCAATTATGGAATATCAAAGTACCAAAATTGTGTAAATCATAACTATATTGTGTATTTATTGTTTTCTTTATAGATTATGATATGGTGATTTAACATTTTAGTTATAATGGCTAAATGTATCCCCTAGTTGCCATTACTTTAAAGGTAAGCTTATTGGGATTGACAAAATTTTGCAGTTAGGCCTATTCCTTTTTCACTCCAAATGTGTGAAGAAGGCATATTAAATTGGAGCTTAATATTGCTTAATACTGTTTTTATAAGATCTTAATACTTTAATTTGTTTTC[A/C]GAGGATGAATTGTTTTACATAAAAAACAATGCCCACAAAGAACAAAAATGTAAAGTTGTCTGCAGTGCGGAGGAGGCAGATGCACTGTTTAAGCAATTTCACTGCAGTGACATGGGTGCACATGTTGGACAACTCAAGACGAGAGATGCCATTTCTCAGCGCTTTTATTGGCCTGGCATGTCTGCAGACATTGAAAAATGGGTATGCTTATTAACACTTAAACTAATATGTTTATATGACAACGTATAATATGCAAACAACTCATATATTTTCTGTTACCAGGTGTCGGAATGTTCAGTCTGCCAAAGAAATAAAAAAACCCTAAAGCTTGACACAGACTACACACCTATTAAGGTACAACGTCTAAATGTATATTTTAAAAAATTAAATGAATGAATGGATATATTAAAAGTAGGTAATTTCAAAGAAAATATGTTATTCTGAAATTTGTATTTTTGTACAGCCTATTTAAATTGATTAATGATTGTTATGTTTTTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa2125
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109820 Nonsense 264 299 6 6
ENSDART00000126813 None None 280 None 8
Genomic Location (Zv9):
Chromosome 3 (position 43431581)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 42477899
GRCz11 3 43183914
KASP Assay ID:
554-3355.1 (used for ordering genotyping assays)
KASP Sequence:
CTTTATTTTATCACATGTTTTTTAGGGTCCTATCTAAACTGGTAAAGGAC[A/T]AACCAAATACTTGGGACCAGTATTTGGATGCTGCCATGTTCGGACTTCGA
Long Flanking Sequence:
TAAGTGGGTTCAAGTCAAGTCAACTCAAAAATGTTCTGAAGTTTGTTGCCTTAAGATTTTAGGTTGAGTCACCTTTTTTTACAGTGTAGTTTCAGGGTAAATATACAGTGATTAAATTACTTATTGTCTGGAAAAAAGTAGTTACTGTTCAGTTTAGGTATACTTTAATAATTGTTGCTTCTCTTAAATCTTTTAAAGTCTTTAAATGACACCTTTTAAGCTAAACACTATCATCTTGCAAATAGCTAGTAAAATATTATGTACTGTTATCATAGCAAAGACAAAAAAGAATTACTCATCATTAGTTAATACAACTATTGTGTTTAAAACTATGTTAAGTGGAACTTATTTATAAACATTTGACAGAATTTTGCATTTCTTTAAAAAGAGTTACAATGTCACAGGACGGCTAATACCTTTGACTTCAACTGTATATTTGTACAGCCTTCTCTTTATTTTATCACATGTTTTTTAGGGTCCTATCTAAACTGGTAAAGGAC[A/T]AACCAAATACTTGGGACCAGTATTTGGATGCTGCCATGTTCGGACTTCGAACAAAGAAGCAGCTGACCACCCAATTCTCCCCATTTTACTTGATGTTTGGAAGAGAGGCACGCTATCCATGCGAAGTCCCTGAACATTTTGAGGTATTTTGTTGTAAATATTCTGGATTCGTTTTATGTCATTGCTATGTTAAGCTAAGTTATTTATTACCATTTTCCACAGCTTGATGGTTCATTTGAAAATGACTTCACCGAAGACATTGCCATTGACATCAAACGACATGAAAAAATCATGAACATTGTTGAAGACAATGTAAATAAATCTATCTCAAGGACAAGAAAAAGGCTGTCAAAGAAGGCACAATTTAGCCTTCAGGTGGGAGCAAAAGTGTGGAGAAGAAATGTCCGGAGTGAGCAGAGGAAAGGGGGGAAACTAGACCCTGAGTATTTTGGTCCCTTTGTGGTGACCAAAATACAAGGGAAGAGTGTTGATCTTGTGGA
Associated Phenotype:
Not determined