Busch Lab

ZMP

RPAP1

Ensembl ID:
ENSDARG00000075072
Description:
RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:24567]
Human Orthologue:
RPAP1
Human Description:
RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:24567]
Mouse Orthologue:
Rpap1
Mouse Description:
RNA polymerase II associated protein 1 Gene [Source:MGI Symbol;Acc:MGI:1916175]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa17417 Essential Splice Site Available for shipment Available now
sa39167 Nonsense Mutation detected in F1 DNA Not yet available
sa6486 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa17417
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110167 Essential Splice Site 335 1406 7 25
Genomic Location (Zv9):
Chromosome 17 (position 31632768)
Other Location(s):
Assembly Chromosome Position
GRCz10 17 31556695
GRCz11 17 31573658
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GATGAGGAATATGRGGATGGTCAGCTTCTAGTTCAATCTCCAATTTCAGG[T/A]AAGYGATTTCAGTGCCACTACATGGAAATGAAGTTTGAATACAATTAGAC
Long Flanking Sequence:
TTCAAGTTTAAACTCCGAGTTGTTTGAACCTCCTTACTGAAACAGGCCCCTGGTCTAACATATCCCAAAACTGCGCGTGTGTATGTGTATTTTAAATGTCATACAAAATGAAGATAAAAAACACCTGTAGTTTGACTTTTCTTTGTTTATTTTTACTGTTCATTTCATTCATTTATTTTATTTTTATTTTAGTTTCAAACCCCTTATTTATACAGTGTTTTTGGAACATGCCTACTGTTACTGTGTTATTTTGTTTACTCACAGAGTTGTATTTTGTCAGACCCTAGATTAGTGGACTTTGTGAGATCGCGGAAAGCACAGAGAACTCCAGGATCTGAGACTTCATCCAGTCCTGTGCAAAGAAAAGACTTCTTGAAGGAACCTTCAGCTAATAGCGCTTCTCCAGAGATAATAGACACAAGAAAAGCAAAGGAGTCTACGATGGAGGAGGATGAGGAATATGGGGATGGTCAGCTTCTAGTTCAATCTCCAATTTCAGG[T/A]AAGCGATTTCAGTGCCACTACATGGAAATGAAGTTTGAATACAATTAGACAAAATTTTTATAAGGAGAGTAGTTTGATGGACATTTTTAAAAAGGTACTACCAGGAAGAATCTTAAATTATTTATTAAACATTGAACTGAAAAGTCATATTTAACTTTGAATATATATTTTTTGTGAGAATTTAATTCATTTATATTTTATATATTTATCTAAGTAACTTTTTATTGTAATATGAATTTGTTTTTATCATGTAATATTTTTATGTATATCCATCATGCCATGAGGTGCTGTTGTGGCAATAAAAAAATAAATAATATATAAATAAATGATTTCAGTGCCTGCTTGGTAGCAGCAGATTAAATAATATGTTATTGCACTTTCATTAAATTTGATAAAAATGTTATTTGACTTTTTAAAAATAAAATCTGAATATGCGTTGTGCATATTAATTTATGTAAGTAAAAGTGTCTATACATTTGATTTGGTGCAGAATTCTATTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa39167
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110167 Nonsense 343 1406 8 25
Genomic Location (Zv9):
Chromosome 17 (position 31629400)
Other Location(s):
Assembly Chromosome Position
GRCz10 17 31553327
GRCz11 17 31570290
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCATGTGTTTATTTATTTATTTACAGAAGAGGAGCTGCCCATCAGGCCA[C/T]AGAAGGAGTGGGTTCACATGGACAAAGTGGAGCCAGAAAAACTGGAATGG
Long Flanking Sequence:
AGAAAATCAAACTAATGCACCGGATGTGGCCAATTTTGTCAGCACAAGTGCAGCTGGATGGTTTCCAGTTCTTTACTCTCCCTAGTCTAAGATCTGGACACACATATTCAGGACTGTACACTTTGCAGATCTGTCCAGCTAAGCCGTGAGCCCAGCATGCTAGCACAGATGCATCAATTTCAATTAGACTGATTAGAGCAGAGTTAGCTAGAGCAAGCACCAATTTGTTTTAAGGTAATAGAGATAAGAGGAACTCATTGACATTTATGGATGAAGCACATCAGGGGTTACTGCACAGAGAACAGTTCTTGTGTGTTTGCACTTCCGTCAGCATGTGGTACTGCATATGTCGATATACATGGGAGAAAGGAATAAGGGATTTAATTAACTGAAAGTCTAGCTTTAGTTTTGATGGTTTGTGTTATTATTCATTATTAATAATATTGGTGGTTCATGTGTTTATTTATTTATTTACAGAAGAGGAGCTGCCCATCAGGCCA[C/T]AGAAGGAGTGGGTTCACATGGACAAAGTGGAGCCAGAAAAACTGGAATGGACGAGAGACCTTCCTGCACCCAAGAGAAGCAGCACCAAAAAGGTACAAACCAGGAAACCCAGTGATGTGGTTAAATTGAGGCCCAATCCCAAATCTATTTGTGTACCCCTACCCCTTCTCCTTCCCCTTGACACTTAAAACCGAGTGTGAAGGGAAAGGGCTTAAAAATTGACCCTTTAGAATGGGACTGCACTACAGCACCTGCACACGTCATCATATTTCATGCAATCTCTTGCTTCACATGAGATCAGACGATCGCGACTGCTGTAGTTATTCCAGTTGAGTTATTTTTTGATATTTAACTTTAGGAAATAAAAAAAGGCATATATCATGTTATCATAACAATCTAATGTGACAATAAGCTAGTAACTATACTGAATAAAATTTTAAGAGGAAAGAAATGATAAATATAGTAAAAACAAATAAGTTCATTAAAAAAACAAAATGCCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa6486
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000110167 Nonsense 603 1406 14 25
Genomic Location (Zv9):
Chromosome 17 (position 31620939)
Other Location(s):
Assembly Chromosome Position
GRCz10 17 31544866
GRCz11 17 31561829
KASP Assay ID:
554-4132.1 (used for ordering genotyping assays)
KASP Sequence:
TCTTWAGCTGTTTTTTTTWATTATAATSCACCCTTTCTTTGGTCAGATCT[T/A]GGACTGCCCGCGGCTGATGGACRCTGTGATTTCGGAGTTTCTCCCCTGTT
Long Flanking Sequence:
TGTGACCCTTTCACAATCCTAATGTGTATAAACAAATCAAAAGCTGAAACATCTGATAAAAGGGTCCTGCTGAGCTTAGTAAACACAGAATGGTTTGTTTGTAGCTAGTGTAATGTACTGTCTCACAGACCATATTTTGGGTTAAGTTACTTGAAGACTGACGAGTTAACATCGATGCTGAGGAACTGCACTATTCAATGTCTTCAATAAAGTCCTCTCCTTGCATGAACTTTGGTCAGCTTACTTATTTGATGTATTAGAGTCATCTAATACATTGGCGAGCCACCGAAGAATGGTTAAGCCAAATACAGCAAAATCTAACACTGTTTTTAACAAATGGACCCTTATTTTAAAGTGTTATCATTTTATTAAACAATAACAACCCTGTTCTAAACCTTTAGAATGCAGATATTATCTACCAATCTGTTATCCAGTATTTTAGTCTAGATATCTTAAGCTGTTTTTTTTTATTATAATCCACCCTTTCTTTGGTCAGATCT[T/A]GGACTGCCCGCGGCTGATGGACACTGTGATTTCGGAGTTTCTCCCCTGTTCCTGGGCTCCTGCTTCCTCACAGGCTCCATCCTCTTTGTATGGGCTGCCTGTTTCCTTGGCGATGAAGCTGCTGCGTGTGTTAGCAAGTGCTGGAAGGCACATCTGTGCAAGAATAGTGAGTAACCACTGAACTGTGTAGGTTAACCATGTCAAGCGGCAACTAATTGCACATGATTATAATACTTTTTGCAAGATTGACTGGTCTCCCACGCACCTTAGGAAAAGAGTTTGATGCTTATTAAAACACATGACAGGCCACCTACTCAGATGTCAAACCGATAGTGTTGTGCTGAAAATGCCTAAATATATGGGCTCAGTGTAAAGTACAGGCCTATTATCATGTTGAATTTGGAAATTTTGGTTGGTTAAAAGACACCTCTTATGCAAAAGTCACTTTTATTAGGGGTTTAAACACAGGTGTGTGGTGACAGTCTGTGAATATAACCAGC
Associated Phenotype:
Not determined