Busch Lab

ZMP

fxn

Ensembl ID:
ENSDARG00000074356
ZFIN ID:
ZDB-GENE-070209-286
Description:
frataxin, mitochondrial [Source:RefSeq peptide;Acc:NP_001076485]
Human Orthologue:
FXN
Human Description:
frataxin [Source:HGNC Symbol;Acc:3951]
Mouse Orthologue:
Fxn
Mouse Description:
frataxin Gene [Source:MGI Symbol;Acc:MGI:1096879]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa34315 Nonsense Mutation detected in F1 DNA Not yet available
sa11321 Essential Splice Site Available for shipment Available now
sa16490 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa34315
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113008 None None 169 1 6
ENSDART00000142577 Nonsense 25 200 1 6
Genomic Location (Zv9):
Chromosome 8 (position 11381395)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 11287729
GRCz11 8 11325434
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTGTCGTTTGTATCAACTGAGCTTGAGCTCCAGATGGAAATGTTACCAA[C/T]AAATCTCCAGACTGTCAACAATGAGCAGTGGACTTAATGTAGGTGAAGTT
Long Flanking Sequence:
AATAAAATAAATTCCTAGAACAAACTGTTATTCATAAAACATATATTGAAATCATATAAACATATATTGATTATTGTTCTTAAATTGATAGAATAAAAAAACTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAAATAATAATGTCCACTGTAAAAAAATGAGGGGGGCGGGGGAAGAAATAAATTGTAAAAAAAACAGAAAAGAAAAGGAAATAAAACAATAACAAATGTGCTTTTATTTTGTTAGGACCTCTATTTTGAAATGGCACGAGCACTGACAACGCGCGCGCGTGCAATCTGACTAGCCGCTGGACACTTGCATCCTTTCTGTAGTCATGTCAAGGTTAACTATTAAATATTGTCGTTTGTATCAACTGAGCTTGAGCTCCAGATGGAAATGTTACCAA[C/T]AAATCTCCAGACTGTCAACAATGAGCAGTGGACTTAATGTAGGTGAAGTTAAAACAAACATCTCTGACTGGTTAGCATGAATGGATTCTTTACCTACATATCGCTTTTATCATATAACGTTAACGTTTGTGTCGTGAATGTCTCTTTTTTAAATACTATTTCAGAGAGTCAAAGCGATTAAATTAGTCAGAGCTTAACTTAGGAGCTTAACTTAGTTTACTTGGAGTATAAATCCTAAAACTTTGCCTGTTGCATTGAGGTAATTGCAGTTTTTTTGGATTGCTTAAGCACGATTTTAAAAACAGGGCCCGTGTTTTCAAAACAGTACACACAATTAGCACAACCACACACCCAATTAGCAAAACATTACAGATCCTTTGCATAATTAAACACTCTTATAAAAACTATAGACTTCTGTTTAAAAACCACACTTTTTTACCATAAGAAACACACATTTTCACATTTACCATACACTGTTTGCACGAGTTACACACTGCTGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11321
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113008 Essential Splice Site 6 169 None 6
ENSDART00000142577 Essential Splice Site 37 200 None 6
Genomic Location (Zv9):
Chromosome 8 (position 11381355)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 11287769
GRCz11 8 11325474
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGTTACCAACAAATCTCCAGACTGTCAACAAYGAGCAGTGGACTTAATG[T/C]AGGTGAAGTTAAAACAAACATCTCTGACTGGTTAGCATGAATGGATTNNNNNNCTT
Long Flanking Sequence:
ATATATTGAAATCATATAAACATATATTGATTATTGTTCTTAAATTGATAGAATAAAAAAACTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAAATAATAATGTCCACTGTAAAAAAATGAGGGGGGCGGGGGAAGAAATAAATTGTAAAAAAAACAGAAAAGAAAAGGAAATAAAACAATAACAAATGTGCTTTTATTTTGTTAGGACCTCTATTTTGAAATGGCACGAGCACTGACAACGCGCGCGCGTGCAATCTGACTAGCCGCTGGACACTTGCATCCTTTCTGTAGTCATGTCAAGGTTAACTATTAAATATTGTCGTTTGTATCAACTGAGCTTGAGCTCCAGATGGAAATGTTACCAACAAATCTCCAGACTGTCAACAATGAGCAGTGGACTTAATG[T/C]AGGTGAAGTTAAAACAAACATCTCTGACTGGTTAGCATGAATGGATTCTTTACCTACATATCGCTTTTATCATATAACGTTAACGTTTGTGTCGTGAATGTCTCTTTTTTAAATACTATTTCAGAGAGTCAAAGCGATTAAATTAGTCAGAGCTTAACTTAGGAGCTTAACTTAGTTTACTTGGAGTATAAATCCTAAAACTTTGCCTGTTGCATTGAGGTAATTGCAGTTTTTTTGGATTGCTTAAGCACGATTTTAAAAACAGGGCCCGTGTTTTCAAAACAGTACACACAATTAGCACAACCACACACCCAATTAGCAAAACATTACAGATCCTTTGCATAATTAAACACTCTTATAAAAACTATAGACTTCTGTTTAAAAACCACACTTTTTTACCATAAGAAACACACATTTTCACATTTACCATACACTGTTTGCACGAGTTACACACTGCTGTGATAAACCTAAAACACTTTTAGCACTTCTACTTCCCTATG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16490
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113008 Nonsense 58 169 4 6
ENSDART00000142577 Nonsense 89 200 4 6
Genomic Location (Zv9):
Chromosome 8 (position 11377229)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 11291895
GRCz11 8 11329600
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTAACTATTGCAATGRTTGTTTTGTATAGAGAAATATCAGAGGCCGAGTA[T/A]GAGAGACTAGCAGAAGAGACGCTGGATGCATTAGCAGATTATTTTGAAGA
Long Flanking Sequence:
GTGACAATTAAGGGATTACTTGGTCATAAAACAAAGTATTATAATATCAAATTCTACAGATGCCCTGTAATTGGCTCTCATGGCACAATATTTGTAAAATTCACTGTACATTTAATTTGCAATAAATATACTGATTTGAGATTTATTATTATGTTTGGTGAAGTATGTTATCTAAAACTTTCATTACATACAGACAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAAATAGATAGATTGATAGACAGACAAGTAGCGCAAAGTATTTTTGATTCAGAAATCATTATAATACTATATTTTAACACAAACAGCTATTAATAAAATCTCTTGGTTTTTTTCCATCATTATCACACTACTGCTGTCATTTCCTTAACTATTGCAATGGTTGTTTTGTATAGAGAAATATCAGAGGCCGAGTA[T/A]GAGAGACTAGCAGAAGAGACGCTGGATGCATTAGCAGATTATTTTGAAGATCTCACAGATGAAAACTTCACTGGACTGGACTATGACGTCGTCTTTTCTGTAAGTACACATCTTATTATCACATGCTTGCAAATTAAATGCCAGTAATGCTTGAACAGTCTAAAAGTCTGTTTTGCCTTGATATCCAGTAGGGGTCATTATTGGTCTAAAAACTGAAATGTTTTCAGTCAATGAAATTATGAAATCTGAATTGTATATTTGAATTATGGGCATTTAAGTTGTTTATTTAGATAATTTTTTGTTAAATATAATAATACTGTCATATAGAATAAAAATAAGGGTGTGGTTGGTTTATTCAAAAATTATAATTTTGTTCTAATTTACCTTTTGTGTTGTTTCAAGCCTTTATGAATTACATTTTTACCAAGCATGTTGGTAATTTAACTGTTTTGCAGTTGCAGTCAACATCTGTAGAATTATATTAATAACAAGTTTTACTT
Associated Phenotype:
Not determined