ZMP
lgi2b
Ensembl ID:
ZFIN ID:
Description:
leucine-rich repeat LGI family, member 2b [Source:RefSeq peptide;Acc:NP_001034731]
Human Orthologue:
LGI2
Human Description:
leucine-rich repeat LGI family, member 2 [Source:HGNC Symbol;Acc:18710]
Mouse Orthologue:
Lgi2
Mouse Description:
leucine-rich repeat LGI family, member 2 Gene [Source:MGI Symbol;Acc:MGI:2180196]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa39651 | Splice Site, Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa13065 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa39651
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Splice Site, Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000101623 | Splice Site, Nonsense | 120 | 552 | 3 | 8 |
| ENSDART00000113109 | Splice Site, Nonsense | 154 | 586 | 3 | 8 |
Genomic Location (Zv9):
Chromosome 1 (position 40416885)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 39306294 |
| GRCz11 | 1 | 40024367 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTCTGAAATAAAGGAGGATGCATTCTCAGGGCTTCCTCATCTGGAGTA[T/A]TTGTAAGTATATGGGCAGCTTTACTCAACTCATGAGCAGAAATATCACCT
Long Flanking Sequence:
AATTATCTTCGCCTCATAATTTTTGAGCAAAATTGCTTATAATTGCACGATATTAAACATGAAATATTGTGATTAACGTTTAAGCCTATAAACGATTTGTTTTCGACGCTGAAACTGTACATTAGCGTAACGTTTAGTATAATTTAATAAATGAAGGAAGTGTTGTTTCTAAAAATTGATTGTTTTTATTTTAGGAGTATTGTTAATTGCAGTTTCCCAGAAATCAATGAGGCAATGTTCTCGCTCATGCCCTCACTGCAGTTGCTGTAAGTGACTGCTGCATCAATTCTATTCAATTTCCTGTTTATCTGCTTTAGAAGACACTAACACTTATGTATATGAGCTACAAGGCGTTCATTGTTGTGTTGGCATGCTTGTGTTACTTCAGTGTGGGTGTTAAGATCATGTTCGTGGCGTTTTCTCTTTCTTAGCCTTCTTAGTTCTAATTCATTTTCTGAAATAAAGGAGGATGCATTCTCAGGGCTTCCTCATCTGGAGTA[T/A]TTGTAAGTATATGGGCAGCTTTACTCAACTCATGAGCAGAAATATCACCTCTTTATGGTGTTTTTTTTCTGGTTAACATTCTGGCATCCATATTTATCAATATCCCTGCAGACAGACTGGCTGAAATTCTTTGTTGACTTACATTTTTTTTTCTGACCAGATTTATTGAAGGTAACAAGATTGAAGAAATAAATAAGTATGCCTTTAGAGGACTTCGGGATGTTACACATTTGTGAGTATATCATTAAGGGAACTGAATGCACATTTATGTCATTTGTTTGTACGACTATACATTTATAAGACTAGTATGAAATATATTATATATATAGTATGATATATATTAATATAATGTTATTATGATTTTTGTAAAATTGTCACTACATAATATGACATATTGCTGTTGTGTTAAGTATTATTATGTGCATTGTGCTTAAAAATCTTTGAACTTTTCTCTCTGTTCTCACAGATCATTAGCAAACAACAATTTAAAATCATTGCCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa13065
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000101623 | Essential Splice Site | 225 | 552 | 6 | 8 |
| ENSDART00000113109 | Essential Splice Site | 259 | 586 | 6 | 8 |
Genomic Location (Zv9):
Chromosome 1 (position 40420171)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 39309580 |
| GRCz11 | 1 | 40027653 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGTCCTATTAAAGGATGTCCCAGAAAAACACAGCAAGTGTGTCTCCACAG[G/A]TAACTATTTCKGTTCMTCCGATATCTCTGATTAGTTTTAGTTGAATCTTG
Long Flanking Sequence:
TCTATTCTTAACAAAGCTCTTATTTTATTGAATTAAAACTGTTTTATTAAAATGCACCAAAAATATGATCTATTGACCATTTCAATGTGGTCATGGCCCATGAACATTTCCTGCTTGCTATCAAACTCTTTCTTAACTATAAAAAGAAGCAAATCAGCTACCATAACATTATTTATCAATATGTGGCTCTTTTTGGATTCTCGGAAGCTATAGAAATTAAAAATGTAAAACAGGAAATATGCTGGGACCATTGTTTTTGTTTACATCTCTCAAAATGGTCTTATGCTATGCCTTGTATGTTGTTCTAATGAATTCTTGCCCAATAAACAGAGACCTGCGAGGAAACATGTTTCACTGTGACTGTGAGTCCATGTGGCTGATGCTGTGGTTGAAGCGATCCAATGCCACAATCTCAGATGTTTACTGTGCCAGCCCATCGGCCATGAAGGGTGTCCTATTAAAGGATGTCCCAGAAAAACACAGCAAGTGTGTCTCCACAG[G/A]TAACTATTTCTGTTCCTCCGATATCTCTGATTAGTTTTAGTTGAATCTTGCCCACAAATATCTTGATATGTTGAAAAGAACTGAACTGTTCAGTGAAAAAATGTCTGAATCTTTTCCCTTCAGATTTTGTTCAGCATCAGATATTGAATACTCAGTCAATGTCTGCTGACATCTTTACTCATAAAGATGATATATATGTGGCTATGGCGGTTCCAAATTCAGACAGCTGCATCATCATGGAATGGGATCACATTGAGACAAAATTCAGGCCTTTTGATGACATCACAGGTTTGACTCCATAATCATTTGTCTAAATGATGAACAGGTATAGAAGTTTGTTTCATTCTCTTAATATATTATGTTTCAGGTCGGTCTGCTGTAGGGTGCCGATCTGTTTTAATCAACGAGCAGGCGTTTGTCATTGTCCTCCAGCTCTTCGATGGCTCCCTTGTCTACAAATACGACCAAGCACAGAATAAATTCACCAAGTTTCAGGCAGT
Associated Phenotype:
Not determined