Busch Lab

ZMP

matn3b

Ensembl ID:
ENSDARG00000069265
ZFIN ID:
ZDB-GENE-050221-9
Description:
matrilin 3b [Source:RefSeq peptide;Acc:NP_001012385]
Human Orthologue:
MATN3
Human Description:
matrilin 3 [Source:HGNC Symbol;Acc:6909]
Mouse Orthologue:
Matn3
Mouse Description:
matrilin 3 Gene [Source:MGI Symbol;Acc:MGI:1328350]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa24939 Nonsense Mutation detected in F1 DNA Not yet available
sa28147 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa24939
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000100650 Nonsense 204 299 2 4
ENSDART00000100653 Nonsense 339 434 3 5
ENSDART00000100655 Nonsense 339 478 3 6
ENSDART00000145395 Nonsense 339 478 3 6
ENSDART00000146249 Nonsense 339 434 3 5
ENSDART00000148040 Nonsense 204 343 2 5
Genomic Location (Zv9):
Chromosome 13 (position 32853702)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 32499650
GRCz11 13 32630100
KASP Assay ID:
554-7424.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAAGTCGAAGAGGTGTCAGCAGCAGCAAGGGCTTCTGGGATTGAAATATA[C/A]GCAGTAGGAGTGGACAGAGCAGAAATGCGGTCCCTCAAGCAGATGGCCAG
Long Flanking Sequence:
ATTTTATGAATTTTTAATATTTATGTGATTTTAATACTAATTTATTATTTATCTCCCACAGCTCCAGCAGAGCCCTGCAAGAGTCGTCCACTTGACCTGGTCTTCATCATCGACAGCTCTCGAAGTGTCCGTCCTGCAGAGTTTGAGAAGGTCAAAATCTTCCTCTCAGAAATGGTTAACTCTCTGGATATCGGATCCGATGCCACAAGAGTCGCGCTGGTCAACTACGCCAGCACCGTCAACATTGAGTTCCATTTGAAAAAGTACTTTAGTAAGGCTGAGGTCAAGCAGGCCTTCTCCCGTATTGATCCACTCTCGACAGGAACCATGACTGGCATGGCTATCAAAACCGCCATGGAGCAAGTTTTTACAGAAAATGCTGGAGCCCGGCCGTTAAAAAAGGGCATTGGTAAAGTGGCCATTATTGTGACAGATGGAAGACCGCAAGATAAAGTCGAAGAGGTGTCAGCAGCAGCAAGGGCTTCTGGGATTGAAATATA[C/A]GCAGTAGGAGTGGACAGAGCAGAAATGCGGTCCCTCAAGCAGATGGCCAGTCAGCCGCTCGATGACCATGTGTTTTATGTGGAGACATACGGAGTGATCGAGAAACTCACATCCAAGTTTAGGGAAACGCTCTGTGGTAAGAGAACATAGAGGGTTTAATCTACAATTATGAAGCACTTAAAGTAAAATAAAAAGTGTTTAAATATATATTTGGGTCAAAAATGAGCTGTCCTGTTTTGCAAAAGTAATTTTATATGCTTAGAAAGCAAAATTTTAGGCCTTAAAAAGTCTTAAATCTACTGAAATGTTGTGTTGGGGGTCTTAAATCTTTTTTAACAGGTCTTAACTTTACTTTGTTTATGTATAGCTACCCAATCTGGCCATTAACACCCTTACAATCACCAACAATCCCAATCTCAATAAAACTATTAACTTTTAAAAAATAGCATTTAATTACTTTCTATTTATTTACTGCTGAGGATACAGACCCAACCTTTATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa28147
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000100650 None 284 299 4 4
ENSDART00000100653 Essential Splice Site 420 434 5 5
ENSDART00000100655 Essential Splice Site 464 478 6 6
ENSDART00000145395 None 463 478 6 6
ENSDART00000146249 None 419 434 5 5
ENSDART00000148040 None 328 343 5 5
Genomic Location (Zv9):
Chromosome 13 (position 32851265)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 32497213
GRCz11 13 32627663
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACACTTGGTTATTGTGTTAACATTGTGTGTTTTTCTTAACTGTTCCTACT[G/T]GATGACATCTCAAACAGAGTCCAGCAGTTTGATCTTCGTCGTGCCTAGAT
Long Flanking Sequence:
AATATTATTTTGGTACAAATCACAAAAATGCACTGAACAAATGTAATATCTTAAGGATTAAATATTGTATGTGTTATTGTAAATTCACTTTCTGAATGCATTAATATTATTTAAATCTGTTGTTTGAATTTATCGTGTGTGGAGTAAGTGAAAAATTTTCAGCAATAAAAGTATCTCGAAAATCATGTCTGTTTCTCTTACAGAAGAAGCAAGAGCAGATCTGACTGAAAATGCCTGCATGTGTGAGGCTCAGATTGCCTTTCAGCGGAAAGTTCACAACAGCATACAGACGCTCTCCAGCAGACATATCCTTTCATATTTATATAGTATTTGCTTGTTATCGCATATCCTATTAACTACTATCACAGTCTGATAGCAAATAGTAATTAAGTTTTAAATGTTTTTATGATGTATATTAAGATTTTTCATTGAAAGTTAATCTAATTTAAAACACTTGGTTATTGTGTTAACATTGTGTGTTTTTCTTAACTGTTCCTACT[G/T]GATGACATCTCAAACAGAGTCCAGCAGTTTGATCTTCGTCGTGCCTAGATTGGAAGATGGGACTCAAAGCTGCTTATCTGAATAAAATAAATAGTTATTTAAACTTTTATTGTAACTGCATGTGCATCCTCGTTTTGTTCATTTAACTGTTAAATATCTGTTCGTCATGTTTTGAGTATTATTTTTGAGTAATCGACATGTCAAAAAAAAAAAAAAAAAGGACACAAATTGAAGTATTTGGAAGAATGCATTTATTTTTTGGAACAAATAGTAAAAGTAATATTGCTATTTTGGAGTGTTATGTAAAGTATACGCACATCATTTTATGTTTGGAAAATTGTACAAATATATGTGAATAAATAAAATATTGTTTGATGTCATTTTCTGTCTTTATATTGTTTGACTATTTGTTTTAGATTTTTGAATTCGTTTCACAGATATTCAAAATAATTATGGTATCACAAATGATTAGTTTTGATTAGATGAGGAGTTTTTAAACT
Associated Phenotype:
Not determined