ZMP

si:dkey-20h16.3

Ensembl ID:

ENSDARG00000067730

ZFIN ID:

ZDB-GENE-081030-19

Description:

Novel protein similar to H.sapiens transient receptor potential cation channel, subfamily C [Source:

Human Orthologue:

TRPC6

Human Description:

transient receptor potential cation channel, subfamily C, member 6 [Source:HGNC Symbol;Acc:12338]

Mouse Orthologue:

Trpc6

Mouse Description:

transient receptor potential cation channel, subfamily C, member 6 Gene [Source:MGI Symbol;Acc:MGI:1

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa5914	Nonsense	Mutation detected in F1 DNA	Not yet available
sa43162	Essential Splice Site	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa5914

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000097547	Nonsense	329	840	3	11
ENSDART00000136471	Nonsense	312	697	3	8
ENSDART00000146926	None	None	64	None	2

Genomic Location (Zv9):

Chromosome 18 (position 40178346)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	41788117
GRCz11	18	41778309

KASP Assay ID:

554-3740.1 (used for ordering genotyping assays)

KASP Sequence:

TGTATCTCTGCCTGCTTCCCACACAGTTTGTAGCCCATCCAAACTGCCAA[C/T]AGCAGCTTTTGTCCATATGGTATGAGAATCTGTCTGGGCTCAGGCAGCAG

Long Flanking Sequence:

TTACTATGTGAAAGGTTGGATTCTTGTACTGGTTTAGTTTAACACTGAGAAAACGTTATTTGTTGGTATATTTTAAACATATCTATGCTAACTTTCATTTACAGAATGATTATAAGACGCTGTCTATGCAATGTAAGGATTTTGTAGTTGGACTTCTGGATCTGTGTCGCAATACAGAGGAAGTGGAAGCCATTTTAAACGGAGACACAGAGGCGGGGGGCCACTTTGACAAGGGTGACAGACCTAATCTAGTTCGATTAAAGCTAGCCATCAAATACGAGCTGAAAAAGGTGAGTTTCTTTCATAATAAATATTCAAATCGCAGGAAATGTTTTCAGTGACTGATACAGCTATTAGGTAAATTGATTCAGCTAAGTAGCCTCAGGTCCTGAAATACAAAGATCTCATTACTCTGCAGGATGGTACAGTAATATAAACACATCTGTTTGCTGTATCTCTGCCTGCTTCCCACACAGTTTGTAGCCCATCCAAACTGCCAA[C/T]AGCAGCTTTTGTCCATATGGTATGAGAATCTGTCTGGGCTCAGGCAGCAGACCACGGCGGTCAAGTTACTGGTGGTTCTGGGGGTGGTGGTTGGACTTCCCATCCTGGCCCTACTGTACTGGATAGCACCCTCAAGCAAGGTCAGCCTTTAGTCAACACAACGGCCTTGAATATCTGTGTACAAGTATGAAAAAAACACTCTAGTGATTATGCTTGCATGCAACCAAGTCATCCGTTAGTAATCAGAGTGAAAACACTGCAAAAATGATTTTCTTACTTAGTTTTTGTCTTGTTTCTAGTCCAAATGTCTAAAAATTCTTAAACCAATAAGCATTTTCTAGACAAGCAAAAACTGTTGCCTTAATTTTTAAAAATAGGATGTCATAATTAAGTGAGTTTTTCCTTAAAACAAGCTAAATAATCTGCTAATAGGGTAAAAAAAAAATTTTTTGTTACGTAATCTAACTGCATGGATCCACACAGCAAGCCAGAAAGCATAT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa43162

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000097547	Essential Splice Site	677	840	7	11
ENSDART00000136471	Essential Splice Site	660	697	7	8
ENSDART00000146926	None	None	64	None	2

Genomic Location (Zv9):

Chromosome 18 (position 40200618)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	41810389
GRCz11	18	41800581

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TACTCAACATGCTCATCGCTATGATCAACAACTCATTTCAGGAAATTGAG[G/A]TAATCACATTCTGAAATGAGATCTGTAAAACGACCAGACATTTGGATTGT

Long Flanking Sequence:

AAAGTTCCTTAAATCACCTTTCTTCCCCATTCTGATGCTCGGTTTGAATTGCAGCAGATCATCTTGACCATGTTTACGTACCTAAAGGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGACATCGTGTTAGGCAGTAACAAGCAGTTGGATAGGTGTACCTAATAAACTGGCCGGTAAGTGTATAATGGGACCAAAAGGAATAAGGAATTAGATCAAGTTAATAACCACAGCAGATCTTTATAATGCTATTTTAACTGGCGCTGATGAATGAAATATTTTTATGTTTTTTCTTCTTCTCCAGTGTTGAGGAGAGCTTCAAAACTTTATTCTGGGCTATTTTTGGACTTTCCGAGGTCAAGTCTGTCGTCATCAACAACGGGCACAAATTCATCGAGAATATTGGCTACGTTCTTTATGGAGTCTACAACGTTACCATGGTTATCGTCTTACTCAACATGCTCATCGCTATGATCAACAACTCATTTCAGGAAATTGAG[G/A]TAATCACATTCTGAAATGAGATCTGTAAAACGACCAGACATTTGGATTGTATAGTAGAGGCAGGCCAGGAGTAAATGTCCAGACCCCATCATTTCCCATTCGTATTCCTTTTCAGATGAGTTACAGGTTCTTTATTGTACTCTAACATTTGTTAAATGCAATGCAAAGTCTTCTCTGGTTACAGTAGAAATCGATTATCATTGGATTTATAAATTACAGCCTTTTTGTGTACACAGTTGTCAAAACTGGACCTTCATAATGTATTACAGTAGCATCCAACAGTGAAATCAAATGGTCACGCATTGAATAAAATATGGACAAGAAATATAGTTGGTGCTGCAAATGAAAAAAGTCATTATTAATCCTACAAAACCCAAGATTAATTGCGGCAGAGAGGTCTGATGAGGTAACAGGAAACAGGAGGCTATTTTTGGGTGCATTTGGTGAAATTTATTGCCATCTGGGGATCTTATTATCTGACCATTGCTAAAATGTCAACA

Associated Phenotype:

Not determined