Busch Lab

ZMP

zgc:154100

Ensembl ID:
ENSDARG00000063670
ZFIN ID:
ZDB-GENE-060929-28
Description:
TFIIA-alpha and beta-like factor [Source:RefSeq peptide;Acc:NP_001070039]
Human Orthologues:
GTF2A1L, STON1, STON1-GTF2A1L
Human Descriptions:
STON1-GTF2A1L readthrough [Source:HGNC Symbol;Acc:30651]
general transcription factor IIA, 1-like [Source:HGNC Symbol;Acc:30727]
stonin 1 [Source:HGNC Symbol;Acc:17003]
Mouse Orthologues:
Gtf2a1l, Ston1
Mouse Descriptions:
general transcription factor IIA, 1-like Gene [Source:MGI Symbol;Acc:MGI:1919078]
stonin 1 Gene [Source:MGI Symbol;Acc:MGI:1924307]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa35385 Nonsense Mutation detected in F1 DNA Not yet available
sa42103 Nonsense Mutation detected in F1 DNA Not yet available
sa31899 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa6280 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa35385
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000093222 None None 376 None 9
ENSDART00000093247 Nonsense 182 917 1 13
Genomic Location (Zv9):
Chromosome 13 (position 99658)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 78489
GRCz11 13 42122
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGGCCCCACTGCTCCAGCACCGGCCCCATGAGGAGCAGGAGCTCTTCCTG[C/T]AGATCTGTGACCGCGTGTGGATGCGGCAGGACAGCAGTGGCACCGTGCTG
Long Flanking Sequence:
AGGAGGGCCGTGGTGAAGGGCTGGCCCTAGGCCCCGCAGTGGCCCCCAGACCCCCATCCTCCTTTGTCCCGCAGGGGCTGTTCCTCAGCCAGAGAAGGCCTGGGTGGCCCCTGATGCTGCGGATCCCGGAGAAGAAGAACCGCATGTCTTCACGGCAGTGGGGGCCCGTGTACCTGCGGCTCCTGCCTGGGGCCCTGCTGCAGCTCTTCTACGAGGAGGGCCTGGAGAAACCCTTCAAGGAGTTTCAGTTGCAGGTGCAGTGTGCTCTCTCTGGGCCCGCTCTGGAGAGCTACGGGGAGCCGGGCAAGATCGCCACGCTGAAGGTGGAGCAGGTGTGGTACACGGAGAAGAAGCGGCGCGAGGCCCGGCAGCTGCTGAAGTTCGGCTCCACAGACTATGGGGCGCTGGAGGACCTGCGGGTGTCCCTGGAGGAGGAGCTGGTACGGTTAGGGGCCCCACTGCTCCAGCACCGGCCCCATGAGGAGCAGGAGCTCTTCCTG[C/T]AGATCTGTGACCGCGTGTGGATGCGGCAGGACAGCAGTGGCACCGTGCTGGAGAGCTCCGCCATCACACAGCTGCACTGCCTGGCCTTCCTGAACGCGCCGGCCGAGTGTTTCCTGGAGCTGGGGCTCCTGGGTCGGGCCCCTGAGGAGGAGGACCCGCTGTGGATGGAGATCTTGGAGTATCACCTGCACCGCTGCGTGCGGCAGGCTGAGTTTGCGGAGCGGCGGCTGCTGCGCTTCTGTCCTCCAGACGGCTGCCGGGTGGAGCTGCTGCGCTTCCGCACGCGGGGCCTGGCCTGTGGGGACGCTCCACTGAGGGCCCGGGGCATGCTGACGCTGCAGGGAGCCAGTGTGCAGCTGCAGGTGTTCCTCCGCCTGCAGCCCGGCTTCCCCACAGCAGGAGCGCTGCCCGTCTGCAGGAGGGTGGAGGTGCGGGTGCCGCTGCCGGGCGAGTGTGTGCTGGTGCCCGCTGGAGCGTCTCTGTTGCGCCGTCGGCCCCTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa42103
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000093222 None None 376 None 9
ENSDART00000093247 Nonsense 441 917 2 13
Genomic Location (Zv9):
Chromosome 13 (position 98759)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 77590
GRCz11 13 41223
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CGCTGATGAGGGTGGAGTGTGAGGTGGAGGAGGCGGCGGCGTCCAGCACA[C/T]GAGTGCAGTCTGTGGGCATCCAGAGCGACATCCAGCCGCACAAACAGCTG
Long Flanking Sequence:
GGAGCGCTGCCCGTCTGCAGGAGGGTGGAGGTGCGGGTGCCGCTGCCGGGCGAGTGTGTGCTGGTGCCCGCTGGAGCGTCTCTGTTGCGCCGTCGGCCCCTTAGGGCCCGCATACACAGGAACACCTGCCTGGGCTCCGCTCTTGAGGCCGAGGCTCAGTCTGTCACACACGCGTCTGTCGGCTCCGTCAAATATGAGAACGTGCACCGAGCAGTCGTGTGGAGGATCGAGCAGCTGCCGCCCAAGAATACAGGTGAGAGTGTGTTCCGTGTGTGTGTTCATCAGACGGCCTGTTTCTCCTCTCCTCAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCTCAGCTGTGGATGTGCCGCAGTCGTGCTCCTGCAAGCTGGAACTGGCCTCAGATCAGCAGATTCCTGCAGACTGGCAGCCGCTGATGAGGGTGGAGTGTGAGGTGGAGGAGGCGGCGGCGTCCAGCACA[C/T]GAGTGCAGTCTGTGGGCATCCAGAGCGACATCCAGCCGCACAAACAGCTGAGCAGCAGAGCGCTCTACCACTGCCAGGTACAGCCTCCACCCTCGGGCCTCCATCACTGCTCCATCCTTTATCTGTCCTCCACTCCTCCATCCTGCTTCACCCCTCTCTCTCTTTGCTTTCTAAGGTGGAGATGGAGAAGCAGCTGATGGAGGCCGACACACAGCAGCAGTCCAGCTGTGCCACGCAGTGATTGATCGCAGCCGTCCAGATCACCTGTGCTAATCTGCCGCTCCTCCCCCACAGCAGTGTCGTCACCTGCACACCCGTTCATTAACCACGAGAGTCACATGAAGTGTACATATGTACAGTCCAGAGTCTTCTGATATCTGTAACGGCCGCCTGGACATCTGCTGCACTGCACCCTGCTCTACAGCTCACTGACACACGGAGACACACGGGGACATGAAGAGGACACCAGCCGCTCACTGACATGATGCAGAAACACAAAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31899
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000093222 None None 376 None 9
ENSDART00000093247 Essential Splice Site 542 917 5 13
Genomic Location (Zv9):
Chromosome 13 (position 95543)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 74374
GRCz11 13 38007
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGGGTTCCACCATGCATTGAAATCTGTGTGTAATGTTAGAACTTCTGCA[G/A]TGTTCTGCTCAGTGATCATGTCTCTGTCCTCTGCTTTTCTCTCAGTCGTC
Long Flanking Sequence:
ACAGAGCCTCCACAAACCCACAGGTAGCTGCTGGCCTGATCACTACAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCGTCAGACGAGTGTATTGACAGTGTGTTTAAGCAATAGTTCTCCATCAGTTCATTCGTTTGGGCGTTTCAGCGTTTGGGTTTTAGAGAAGATGATCCAGATGTTCAGTCTGTTCTCAGTTCTGCTCTGAGTTCTGTGTAGTGTGATCTAACCCTGCTTTAAGAGTCTGATGTAGAATGAAAAGCGGCTGGGTCACGGGTGTCTCTAAAACAGATCAGTATGTAGGGTGTGTGAGACGTGTTGACTCGTCCACACTGCACTCACTCCTGTTTTTAATCCTACACTGTGCACACATTAGAGCAGAACACAGCATTGGATTTGACCTCCAGTGTCCCGAACAGAGTAACACACACACACACACACACACACCGCTCAGGGTTCCACCATGCATTGAAATCTGTGTGTAATGTTAGAACTTCTGCA[G/A]TGTTCTGCTCAGTGATCATGTCTCTGTCCTCTGCTTTTCTCTCAGTCGTCATTCCAGCTGCTGCAAATGTGCAGAACTTCACCTCTAAAGTAAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACTGCATCAGCAGAACATCTACACTCCTCTCTTTCTGTTTGGGTTTACAGTGTTCATTATTCAGTTTCTCCTGCATATAGTGAATAATCAAGTTCTCCTTAAAGTCGTGACTGACCCGTGCTGTACTGTTCCTCCAGACCAGCTGTGGGTCAGTGGCCACCTTCTCTCTGCCGCCGGGAATAACCTATCCAGTGCAGATTCCAGCCGGTGTGACACTGCAGACGGCCTCCGGTGAGCACTTAATAATGCTGTCCTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTGTGCATGCGCGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTCTGTGTGCGTGCGTGTGTGT
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa2704
Status:
Allele not cryopreserved
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000093222 Nonsense 337 376 8 9
ENSDART00000093247 Nonsense 878 917 12 13
Genomic Location (Zv9):
Chromosome 13 (position 92260)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 71091
GRCz11 13 34724
KASP Assay ID:
554-3120.1 (used for ordering genotyping assays)
KASP Sequence:
AGCGAACAGGACATCCCGGAGATMTTTGACAMGGAGAACGTCATCGTCTG[C/A]CAATATGACAAGGTAAAGAAGCAGAACGGATCATCCTSTCAGTTTACAGC
Long Flanking Sequence:
GCAGTTCAGGAGTCTGCTGCTTCAGGATTTACACTGATCCCCCTTTCCTCAGCGTCTCCGCCGGGGTCACGGTAAACACTGGAGTGGGGGAGTATAATGGAAGTAAACTGTGTTCTGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCAGCAGATGCGGATCCTGCCGTCTCAGAGTTTCTGTCCATCTGGATGTAAACTCTGCAGGACGGAGTGTGTTTTCAGATTTACATTTACACACACTGACAGTGAGCTGAATGATGATGAAGTAACTCCACAGGTTGTGTCTGTGAAGCTGATGCTCTGCTTCATCAGCGGTCAACATCAGATGCTCTTTCTAAGAGAAGAGACCCGTACCTCTTTCCTCTGTGTTTTCAGGATCCGCTGAACTCTGGAGATGATGTGAGCGAACAGGACATCCCGGAGATATTTGACACGGAGAACGTCATCGTCTG[C/A]CAATATGACAAGGTAAAGAAGCAGAACGGATCATCCTGTCAGTTTACAGCGTTGATTATTGAGTCAGATGTAGTTGCACGGCAGATATAAGTTGAGTTATTTGGGTTTCCTGCCTGTGTTTGGGTCAGCAGAGCCTCTGTAGTGTTTAACAGTGATGTTATCACTGCACTGAGTGGACATTGAGCTGACCTGAACTGCTCCATCATGTGAGCGTTGTTATTCTGGAGTTTGCCCGTTCGTCTCTGAGCTGCGTCGACTGACTGCTGAATAAAACACTGTAGGAATAAAGCTCACGTGACAAAAAGAGGAGAGATGAACCGTTTTAAATCTTTCTACATTTATTTTGTTGTTTCTGCATCTTACAGATTCACCGTAGTAAAAACCGCTGGAAGTTTTACCTGAAGGATGGCGTGATGTGTTACGGAGGGAAGGATTATGTGTTCTCCAAGGCTGTGGGTGAGGCCGAGTGGTGAAACGGCGAAGCGATGCGCTCAGAGCTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa6280
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000093222 Nonsense 339 376 8 9
ENSDART00000093247 Nonsense 880 917 12 13
Genomic Location (Zv9):
Chromosome 13 (position 92254)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 71085
GRCz11 13 34718
KASP Assay ID:
554-5420.1 (used for ordering genotyping assays)
KASP Sequence:
CAGGACATCCCGGAGATMTTTGACAMGGAGAACGTCATCGTCTGMCAATA[T/A]GACAAGGTAAAGAAGCAGAACGGATCATCCTSTCAGTTTACAGCGWTGAT
Long Flanking Sequence:
CAGGAGTCTGCTGCTTCAGGATTTACACTGATCCCCCTTTCCTCAGCGTCTCCGCCGGGGTCACGGTAAACACTGGAGTGGGGGAGTATAATGGAAGTAAACTGTGTTCTGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCAGCAGATGCGGATCCTGCCGTCTCAGAGTTTCTGTCCATCTGGATGTAAACTCTGCAGGACGGAGTGTGTTTTCAGATTTACATTTACACACACTGACAGTGAGCTGAATGATGATGAAGTAACTCCACAGGTTGTGTCTGTGAAGCTGATGCTCTGCTTCATCAGCGGTCAACATCAGATGCTCTTTCTAAGAGAAGAGACCCGTACCTCTTTCCTCTGTGTTTTCAGGATCCGCTGAACTCTGGAGATGATGTGAGCGAACAGGACATCCCGGAGATATTTGACACGGAGAACGTCATCGTCTGCCAATA[T/A]GACAAGGTAAAGAAGCAGAACGGATCATCCTGTCAGTTTACAGCGTTGATTATTGAGTCAGATGTAGTTGCACGGCAGATATAAGTTGAGTTATTTGGGTTTCCTGCCTGTGTTTGGGTCAGCAGAGCCTCTGTAGTGTTTAACAGTGATGTTATCACTGCACTGAGTGGACATTGAGCTGACCTGAACTGCTCCATCATGTGAGCGTTGTTATTCTGGAGTTTGCCCGTTCGTCTCTGAGCTGCGTCGACTGACTGCTGAATAAAACACTGTAGGAATAAAGCTCACGTGACAAAAAGAGGAGAGATGAACCGTTTTAAATCTTTCTACATTTATTTTGTTGTTTCTGCATCTTACAGATTCACCGTAGTAAAAACCGCTGGAAGTTTTACCTGAAGGATGGCGTGATGTGTTACGGAGGGAAGGATTATGTGTTCTCCAAGGCTGTGGGTGAGGCCGAGTGGTGAAACGGCGAAGCGATGCGCTCAGAGCTGAAACTG
Associated Phenotype:
Not determined