ZMP
lin54
Ensembl ID:
ZFIN ID:
Description:
Protein lin-54 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q08CM4]
Human Orthologue:
LIN54
Human Description:
lin-54 homolog (C. elegans) [Source:HGNC Symbol;Acc:25397]
Mouse Orthologue:
Lin54
Mouse Description:
lin-54 homolog (C. elegans) Gene [Source:MGI Symbol;Acc:MGI:2140902]
Alleles
There are 4 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa2567 | Nonsense | F2 line generated | Not yet available |
sa18399 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa2567
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000092110 | Nonsense | 41 | 771 | 2 | 14 |
ENSDART00000135527 | Nonsense | 41 | 211 | 2 | 2 |
ENSDART00000092110 | Nonsense | 41 | 771 | 2 | 14 |
ENSDART00000135527 | Nonsense | 41 | 211 | 2 | 2 |
The following transcripts of ENSDARG00000063194 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 10 (position 11313908)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 10 | 11389774 |
GRCz11 | 10 | 11348012 |
KASP Assay ID:
554-3260.1 (used for ordering genotyping assays)
KASP Sequence:
AGATYCGCCTGCTTCACATCTTACCCCTCCGCCCCAATCTGCCCCAGAGT[C/A]GGCGCAGGTACCAATGGAAACAGAGGTGCCTGAAATCATTAGCATTTGTC
Long Flanking Sequence:
GCCTCAGCCATAGTTAATCCTGTGTGCGTGGGTTTTAGCCTCAGTTTACAATTTTGGAACTTTAAACTAGCGCACAGTTGGCATAACTCTGTTTACGGTGTTGAGAGGCCTTTACAAATAATTAACCATGACGAATTCAATCGCGGTTAATAGGGAAATCGCTTAATTGTTGAATCCTTACTTGGAAACAATATAACAGAAACATTCTGCGTTTTTAAAACCTTGACCTTTTCAAACAGACCTCTCAGCAAACCTTGAGACCGGTTATCTGTCTGTCTAGTGCACATGATACTTTTTCATACTTGATCACTGATATATTCTAACTTTGTTTCATATGTATCTATATTTTTCTCCAGTGTGTTTTCGGTAACTCTGCAGAATGGATGTGGTGTCTCCTGAGCTCAACAGCCTCCTCCCTGATGAGATCATGGATACAGAGGCAATGGATGAAGATCCGCCTGCTTCACATCTTACCCCTCCGCCCCAATCTGCCCCAGAGT[C/A]GGCGCAGGTACCAATGGAAACAGAGGTGCCTGAAATCATTAGCATTTGTCCAACCACCGCGTCTATGCAGGCCATCTCCACCAATGCTAAAAGTACCACCAGTTCCACAACTCAACTCCTACTCACCCCATCATCATCCTCCTCCACCACTACAAAAAACGCCACTCCGACCCTCCCCAAAATTCCCAGCCTTTCCGTCCCGCCAAACCACCAGCTCATCATCAATAAAGTGGCGGCAGATGGAAAGTCTCCGGGCGGCGCAGTGATAAAGCAGGAGGGCCAGAAACTGCTGGTTGCCGGGCTCAGTAAAACAGGGCAGCCCATTATGCTGGCTCTGCCCCACGCTTGGAACAAGCCGGCCACCAGCCAGGGCTCAGGTGATGCCAAGAGCCAGCCCACGCAGATCAAGATGGTGACGGCGATGGGTAAGCCTGTGATCGCAGTGAGCTCAGCCAGTCAGCTGGTGGCTTCATCCACACCACTGCAGGCACAGCACCTCA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18399
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000092110 | Nonsense | 86 | 771 | 2 | 14 |
ENSDART00000135527 | Nonsense | 86 | 211 | 2 | 2 |
The following transcripts of ENSDARG00000063194 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 10 (position 11313773)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 10 | 11389639 |
GRCz11 | 10 | 11347877 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGCTAAAAGTACCACMAGYTCMACAACTCAACTCCTACTCACCCCATCAT[C/A]ATCCTCCTCCACCACTACAAAAAACGCCACTCCGACCCTCCCCAAAATTC
Long Flanking Sequence:
TTCAATCGCGGTTAATAGGGAAATCGCTTAATTGTTGAATCCTTACTTGGAAACAATATAACAGAAACATTCTGCGTTTTTAAAACCTTGACCTTTTCAAACAGACCTCTCAGCAAACCTTGAGACCGGTTATCTGTCTGTCTAGTGCACATGATACTTTTTCATACTTGATCACTGATATATTCTAACTTTGTTTCATATGTATCTATATTTTTCTCCAGTGTGTTTTCGGTAACTCTGCAGAATGGATGTGGTGTCTCCTGAGCTCAACAGCCTCCTCCCTGATGAGATCATGGATACAGAGGCAATGGATGAAGATCCGCCTGCTTCACATCTTACCCCTCCGCCCCAATCTGCCCCAGAGTCGGCGCAGGTACCAATGGAAACAGAGGTGCCTGAAATCATTAGCATTTGTCCAACCACCGCGTCTATGCAGGCCATCTCCACCAATGCTAAAAGTACCACCAGTTCCACAACTCAACTCCTACTCACCCCATCAT[C/A]ATCCTCCTCCACCACTACAAAAAACGCCACTCCGACCCTCCCCAAAATTCCCAGCCTTTCCGTCCCGCCAAACCACCAGCTCATCATCAATAAAGTGGCGGCAGATGGAAAGTCTCCGGGCGGCGCAGTGATAAAGCAGGAGGGCCAGAAACTGCTGGTTGCCGGGCTCAGTAAAACAGGGCAGCCCATTATGCTGGCTCTGCCCCACGCTTGGAACAAGCCGGCCACCAGCCAGGGCTCAGGTGATGCCAAGAGCCAGCCCACGCAGATCAAGATGGTGACGGCGATGGGTAAGCCTGTGATCGCAGTGAGCTCAGCCAGTCAGCTGGTGGCTTCATCCACACCACTGCAGGCACAGCACCTCAAGACACTGCAGGTGGGTAATCTCCGCCCAGACTTACACTGTAATATTGCTAATTAGAGCTACACAATATAGCCACAGAGTTTATGATTTTTTAATATTTTTAATATATTAGAGAATTTAAAGTATTCAGGCACAA
Associated Phenotype:
Not determined