Busch Lab

ZMP

si:ch211-117k11.1

Ensembl ID:
ENSDARG00000062427
ZFIN ID:
ZDB-GENE-070705-19
Description:
Novel protein similar to vertebrate chloride channel 2 (CLCN2) [Source:UniProtKB/TrEMBL;Acc:A5PMN6]
Human Orthologue:
CLCN2
Human Description:
chloride channel 2 [Source:HGNC Symbol;Acc:2020]
Mouse Orthologue:
Clcn2
Mouse Description:
chloride channel 2 Gene [Source:MGI Symbol;Acc:MGI:105061]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa10011 Nonsense Available for shipment Available now
sa18405 Essential Splice Site Available for shipment Available now
sa32880 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa10011
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000090260 Nonsense 47 940 1 23
ENSDART00000145720 Nonsense 47 307 1 8

The following transcripts of ENSDARG00000062427 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 16726297)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 17315585
GRCz11 2 16986754
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGYGTTCGCGGCCAGGCTCCAGAACTGCTGGAGTAYGAGAAAGACCCATG[T/A]GCCAAGTGTCAAGGTGGGTGTGCWGTATACATACACAGGCGCCAACTGCT
Long Flanking Sequence:
TGTCTATAGAGAACAAGAGATAAAATATATTCATTTGTTTTCTGAAGAAGATGAACATTAGTCTCAGGGATTTGGCATCACTACGATGAGTAATTAATGACATAAATTTCATTCATGGGTGAACTAACGCTTAACATGTAAATCTCACAAATAGCGTTATTATAGTAAAGAATCCAGCTTTTTTTTTTTTCAGGGATGGTACTCGGAGACAGAAATCTCTGACAGACTTGCTCCATTTATTTGATGGGCTTTTGAAGAGCCTGTTAAGTTGCACATTATTTCAGCGAAACGCTTCTTGGCTTGGTTTCCTTTTATTACCTTCCCAGCTGAAATCTTCATTGACTCCCGTCTCGCTTTCAGATGTATGGACGCTATACACAGGAGCTGGGGGCCTATGCCAAAGAAGAGGCAGCTCGTCTGCGTGAGGATGGAGGGCTGCGGAGGACCACCAGCGTTCGCGGCCAGGCTCCAGAACTGCTGGAGTATGAGAAAGACCCATG[T/A]GCCAAGTGTCAAGGTGGGTGTGCTGTATACATACACAGGCGCCAACTGCTCGCTGGCTGTTCTGCTTGCGTCATATAGCTTGCTATTTGCAGCAGTGGCTACAGAGCAAAGCTAGAAAAGCAGAGTAAATCCACAAGGATGAAGGGCAGCAGGAATGGAAAGAGGAAAAGGGTCGCGAAGGGCAGGAGACGAAAGAGTTATTGAGAACGTGCTGAAATTGAGGATTAGGTGAGAGCGATGCTGCGATAAGTAGGATGGATTTGACTGAAGATCTGAGTTTTACTGAGGCTGCTGTGATGCATCCACACTCTTGTTTGGGCCCACATGGAATCAGTGACAGCTGAGATTCACTAAAAGATTGACGTCTTTTTTGCAGAATTGGAAGGGCAGTACTTTCATCTCCGTGTAACACGGTGCTTGTCTATCATTTAACACCAGTATTTTGTCTGTCTCCTATTTGTTCTGCGTGATATTCAGAGAGCTAAGATTGTATTTTTTGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18405
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000090260 Essential Splice Site 139 940 4 23
ENSDART00000145720 Essential Splice Site 139 307 4 8

The following transcripts of ENSDARG00000062427 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 16778713)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 17263169
GRCz11 2 16934338
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TATGTGCTCTCAGATCTCTTTGTAACCCCCATTGGTCATTTCTWCCTCCA[G/T]GCTCTGGGATCCCAGAGATGAAGACCATCCTCCGAGGTGTGGTGCTGAAA
Long Flanking Sequence:
TGACAATCGCTCATTCACACCCAAAATGTAACAGAATAGTGCATGCCAATTAGTATGCACCTTATGCCTCTTCAGAGCTGTAATTATGTCGGCAGCACAGAAATGGATGTACGCTGGTCTGCATAGTAACACTTTCTCTTTATATAATTTTCAGCGTGAAAGCACTACTCACACTATTTTGACTAAAAATAACAGAGTAGTACATAAGCGCAGTCCTCTGCAGAGGTGTAATTATGTGCTGTGTGTGTGTGTCGGTGTCTGCAGCACAGAAGTGGATGTACCGCGGTCTGCACAGTAACATGTTGCTGCAGTATCTGGCCTGGGTCACGTACCCAGTGGTCCTCATCACCTTCTCCGCCGGCTTCACACAGATCTTGGCGCCACAGGCAGTGGGTGAGAGAGAGCAACGCACACACTGACTCACGTAATCAATTTACGTCAAACGGCCTTTATGTGCTCTCAGATCTCTTTGTAACCCCCATTGGTCATTTCTTCCTCCA[G/T]GCTCTGGGATCCCAGAGATGAAGACCATCCTCCGAGGTGTGGTGCTGAAAGAGTACCTCACTTTCAAAACCTTCGTCGCCAAAGTGATTGGCTTAACTTGTGCCCTTGGAAGTGGCATGCCTCTGGGCAAAGAGGTGCATGAGATGGGGATATCTGATCCCAGATAAGCTCGCTAATGCTGCAATACTTTAAGCCCTTGGCCTGTGATCACATCTGTTATTTCAATCTCCTCTTGCGTCCTCTAGGGACCGTTTGTTCACGTTGCCAGTCTGTGTGCTGCTCTGTTGAGCAAATTCATGGCCTTGTTTGGAGGAATCTACATGGTGAGAAACGCCTCTAGTAAAGCTGTCATTTTTCAGTAACTTTCTGACATTTCATACATTGGCAACACTTTATTATAACTTCTATTAAGAACATTAGCATTGCCAAATATTGTTGTTGTGTTTCATAAAAACGCCGTTATATTAAACAATTAGATATTGCTTTGTTAAGCACTCCAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32880
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000090260 Nonsense 826 940 23 23
ENSDART00000145720 None None 307 None 8

The following transcripts of ENSDARG00000062427 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 16824488)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 17217494
GRCz11 2 16886071
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCGTCCTCCGCTGGCTAGTTTCCGGGACAGTGGCAACAGCAGCAGCGTCT[C/A]GGAGGTCACTGAGCTCCACAAGCTCTGGAGTCGCCACAAGAGCCTATCTT
Long Flanking Sequence:
ATAAAGTGGACTACTTTGCAGATTTCACCTGTTGCAGGTTATTTTTTAAACGTAACCCCTGTGAATAAGGAGAGACCACTATATATGTTTGCCCAACTTATTTCATTAAAAATTTTGTGTTTTAGCAATCCTGAAAGCTGTCTTATATGGAAAATATCACAGAGTAATATAAACAAAAAAACATTTTCATCACAATACTTTCATCGGTATACTGTATTCATATATTTGTGCATTTCAGACACACACCATTTTTTCACTTCTTGGCCTGGATCATGCCTATGTCACCAGCACCGGACGTCTAGTAGGAGTCGTCTCTTTGAAAGAGGTGCGTGACTGTATTCATTAAACAAGCTCTTCATTATGATTGAAAAACATCTTACCAACAGGTTGTGTTTGTTTCTAGCTACGTAAGGCCATTGAGGGCTCAGTAACCGTAACTGGTGTAAAGGTGCGTCCTCCGCTGGCTAGTTTCCGGGACAGTGGCAACAGCAGCAGCGTCT[C/A]GGAGGTCACTGAGCTCCACAAGCTCTGGAGTCGCCACAAGAGCCTATCTTTGCCACGGGAGATAAACCTCCCCGACCTTGATGACCAAACGGAGCAGCCATCCGAGGGCAGCCTGGTGAACGAAACTGAGTGCACAGAGCTTTCCAGTCAGAACAGCCCATTACACACAGATGACCAATCAGAGCTGCCCTACGCTGACACCTCACCCCAAGATGAGCCTCTGTCGCAGCTCCCATGTGACTGTCCAGAGGTGGAAGAGTCAGAATCTGTTGGTGAACACTGCCCAGAATCTACTGTGGTGGTGGGTGATGGAAACCCCTCGCCGTCAGATGGTCAGCCCGAATGACAGCTGCTGAACGATGGTAACACTCACTCCATTCACACCATAAGCTGGATTGTAGAGTCCGGTTGAGGAGAACCTGGAGGAAGTCTTTTAGCAGTGAAGCACACTTTCTGCTCCGTACTAATCAAAGCAACCCCAATCGCTGGTCCTGCCTTCA
Associated Phenotype:
Not determined