ZMP
si:dkey-20n3.1
Ensembl ID:
ZFIN ID:
Human Orthologue:
RNF38
Human Description:
ring finger protein 38 [Source:HGNC Symbol;Acc:18052]
Mouse Orthologue:
Rnf38
Mouse Description:
ring finger protein 38 Gene [Source:MGI Symbol;Acc:MGI:1920719]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa8465 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa44506 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa11481 | Nonsense | Available for shipment | Available now |
| sa44507 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa8465
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000089233 | Essential Splice Site | 198 | 673 | 2 | 13 |
| ENSDART00000139241 | Essential Splice Site | 198 | 673 | 3 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 17636570)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 18201738 |
| GRCz11 | 1 | 18894675 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAGTTTACCACTATCATTCAGAGCATGCGTGCGCAGATGCCACTGACAAG[G/A]TAAGACATCCTCAATGCTTATAGCCTGCAATGTAGACAAATAAACCGCAT
Long Flanking Sequence:
CACAACAATAACATGTTGTCATCGTCATCAATAGGCTAACGTTCCAAACGAAAGCACCTTTAACATTAATTAATCAGATTGACCCAAGTAAATACGGTTTATCCTTTACAAACAACAATTCTAATGTCGTATTACTGGAGCTTATACCCCAGCGTTACCCTTTCGGAGATCATTTGGAGCGTGTGATGGTGATTTAAATGATGGTGATTTGTACTTACATTAATGTAATAACACACCAGGCGAGATTAAAGTAGTGCCCAGATGTCTCAACATGCTGCCGATATCCTGTAAAGCTGCTGGATCAAGATTCTGTTATTGGACCTGTTGAAACTGTTGATTGCCAAACATGGCTTACAAGCTGTAAATAATTATTGCTGTATCGCATGATTGTAGTGTTTTTAGCTGTCGACTTCAACTGTTCTTCTGCTCTCTCTATAGGTGCCATGGGAGGAGTTTACCACTATCATTCAGAGCATGCGTGCGCAGATGCCACTGACAAG[G/A]TAAGACATCCTCAATGCTTATAGCCTGCAATGTAGACAAATAAACCGCATTTGCAGGGGATTTAGCTGGACTACTAAAGGCTTTGGACTACAAATCGAATGACAGTCAATGCTTTGACTTGACTATTTGCATGGTTTTGTGATGTTTTATCTTGTATGGCTTGTCTGTTTAAAGAATAGCTCTTGCACAAAACAGACTGTAAGCATACATTTTGTGAGCAAAACATAGGGTGCGTCTCAAACAGCTCCCGTGTTCATGAGGCTGGACGATTTGGCCTAAAATCAACATCCTATTTAATTGAACATTTGAATTCGACTATAATTAATGTACGATTATTTTATTTATTTAGTTATTTATTTTTTGCACTCATAGTTCACTGACGGGTTTTGTACAGTAAATTTGTTCACATACTACTAGTGAGAGATTTGTGAATGAAGGAAGCATTACTTGATTTTAAAATAATTTAGGAAACGCGCACTAGATCTACTATCTATGACTAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44506
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000089233 | Nonsense | 458 | 673 | 6 | 13 |
| ENSDART00000139241 | Nonsense | 458 | 673 | 7 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 17666262)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 18231430 |
| GRCz11 | 1 | 18924367 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTCGCCACACCTTCCTACTCCGGGACAGTTCTTACCCTTCCAAGCGCAA[C/T]AGTCCCGATCTGTGAGCATTATATGTTTTTGTAAAATAGCATTCAAATAT
Long Flanking Sequence:
AGAGGCGTAGCATTAATTGGTTTTTGCGAGCGCATGTGGTATGTTTGGATCTGCTGCTCTCTAGTGGTAGAAAGTTGTTAAATATATATTTTTAATGGGACTGTACACCCAAGAATAGACATTTGCACCCATTTACTCACCTTATAGTGAGATATTTTGAAGAATGTTGAAAACCATAGACATCCATAGTCAGACATGTACTTGTATTTATTTATATAACAGTATTGACTACTTTTTAAAACTAAAAATATTTTAAAAATAAAAAATAGAGGTTTGAAAGTCTTTTTTAAGGGGTGCACAGTTGTTTGTGATGGTCTGAAATGTTTTAATAAGTGTTTGTGTTTGAAATGCAGATGTTGCCGGCCTGCTCGGTGCAGCATTTGCCAGTGCCGTACGCATTCCCCTCTCTTCTATCCAGTGATCCACCCTTCCTGCTTCATCCTCCACATCTGTCGCCACACCTTCCTACTCCGGGACAGTTCTTACCCTTCCAAGCGCAA[C/T]AGTCCCGATCTGTGAGCATTATATGTTTTTGTAAAATAGCATTCAAATATTGTTTTTATTATTGTTATTATTCATTTATACATTATACATTTTTACATTTATACTGAGCAAAGCTGTGTTTTTGTCTCATTTATTATCATTTAAAATAGTGTTGTTTTTTTTTGGTTTTTGTTTTTCATTTTAAGCTACATAATATTTGCTACTGTGACCCTGTGGGGATTTTTACAGTTTTAACCCAAAAGTGACCAGTCTGTCAGATGAAGAAGACCTGCAGTCAGATATTCAATCAAAAAGAAAGTTTACTGAAGATAGTTTGCAGTATCATCAGCATAAGCCAACTTCAACACTTGCAAATGAGTTCGTAGGCCGCTCTGCTTACAATCTCAAAGCATCAACAACTATACTCCTACATGACATCATTAACTATGTCATACAGTACATATAGGTGTTTTAATGGGATGGGTAAAACACAGATAGATGTGGAAAATTTCCATGTGCGT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11481
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000089233 | Nonsense | 517 | 673 | 8 | 13 |
| ENSDART00000139241 | Nonsense | 517 | 673 | 9 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 17668204)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 18233372 |
| GRCz11 | 1 | 18926309 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
YAAACAAGTTAATGAATCTTRTGTTTTYCTGTGCGTTCTGTCCAGCCGTA[T/A]CCTCACTTCATGCCACGGCGAATCACAGGCAGACGCTACCGCTCTCAGCA
Long Flanking Sequence:
ATAAACTATACTATTATTTTAATATGTGATTTTTTTTTTTTTTTTTTTGGTACTATAGAAGCAATATCAAATGAAAAAGTATTTGAGCAGCTATTAAGTGTTATTGTTATGTTAGCTATTGAACAATTGAATATTTGTGTTTCTGTGTTTTTAATATTAAACTTCTGCTGCACTATAAGAAAACCAAATGCATATGCCAACAAACTAAAAGACTAATTATGTGTTTTGTTTTTTAATTAATAATAGCCATTGCAGAGGATAGAAAATGAAGTGGAGTTGTTGGGGGATCACCTGTCGGTAGGCGGAGGGTTTAACTATCCTCATTCAGGCCATCCTAGTCCTCTGCCCCCTTCCACCCCATTGCAGTTCCTCTCCCATGAACCCCTGCACCAGGAGCTGTTTGGAATGGTGAGTGACCTTCACCCTTCATCTCTTCTGCTCAATACAATCCAAACAAGTTAATGAATCTTGTGTTTTTCTGTGCGTTCTGTCCAGCCGTA[T/A]CCTCACTTCATGCCACGGCGAATCACAGGCAGACGCTACCGCTCTCAGCAGGCCGTACCGCCACCTCCTTACCACCCTAGTCTGCTGCCCTACTTCCTGTGAGTTACACATACTCGCCTACACCAGAGCTTTGTGCTTAGTGATGTATTAAAGGCGCATTATGATTTATTTTATTTTTTCAAAACAAACCAATCAGCCACAATACAGATTTCATATTTTTCTTCCCACATTTTTCAAGTATTAAAAAAAATAAAATGAAAGTGGAATTTGTAATTTCAAAATATAAGATAAAACATGCATTTCACAAAGCTAAAGTCAGTCATTAATAAGCTAATTAGACAATTTCTGTTGTTTTTTTTATACTGATATTTTACAAATAATAATAGAAAATGAAATTAGATTTGTTTCATTTCAAAATATGAAGTAAAATGTAATGATTTTTTTCAAGTATTAAAAATAATAAAATGAAAGTAGAATTTGTAATTTCAAAATATAAGATA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44507
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000089233 | Essential Splice Site | 550 | 673 | 8 | 13 |
| ENSDART00000139241 | Essential Splice Site | 550 | 673 | 9 | 13 |
Genomic Location (Zv9):
Chromosome 1 (position 17668304)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 18233472 |
| GRCz11 | 1 | 18926409 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGGCCGTACCGCCACCTCCTTACCACCCTAGTCTGCTGCCCTACTTCCTG[T/A]GAGTTACACATACTCGCCTACACCAGAGCTTTGTGCTTAGTGATGTATTA
Long Flanking Sequence:
TTATTGTTATGTTAGCTATTGAACAATTGAATATTTGTGTTTCTGTGTTTTTAATATTAAACTTCTGCTGCACTATAAGAAAACCAAATGCATATGCCAACAAACTAAAAGACTAATTATGTGTTTTGTTTTTTAATTAATAATAGCCATTGCAGAGGATAGAAAATGAAGTGGAGTTGTTGGGGGATCACCTGTCGGTAGGCGGAGGGTTTAACTATCCTCATTCAGGCCATCCTAGTCCTCTGCCCCCTTCCACCCCATTGCAGTTCCTCTCCCATGAACCCCTGCACCAGGAGCTGTTTGGAATGGTGAGTGACCTTCACCCTTCATCTCTTCTGCTCAATACAATCCAAACAAGTTAATGAATCTTGTGTTTTTCTGTGCGTTCTGTCCAGCCGTATCCTCACTTCATGCCACGGCGAATCACAGGCAGACGCTACCGCTCTCAGCAGGCCGTACCGCCACCTCCTTACCACCCTAGTCTGCTGCCCTACTTCCTG[T/A]GAGTTACACATACTCGCCTACACCAGAGCTTTGTGCTTAGTGATGTATTAAAGGCGCATTATGATTTATTTTATTTTTTCAAAACAAACCAATCAGCCACAATACAGATTTCATATTTTTCTTCCCACATTTTTCAAGTATTAAAAAAAATAAAATGAAAGTGGAATTTGTAATTTCAAAATATAAGATAAAACATGCATTTCACAAAGCTAAAGTCAGTCATTAATAAGCTAATTAGACAATTTCTGTTGTTTTTTTTATACTGATATTTTACAAATAATAATAGAAAATGAAATTAGATTTGTTTCATTTCAAAATATGAAGTAAAATGTAATGATTTTTTTCAAGTATTAAAAATAATAAAATGAAAGTAGAATTTGTAATTTCAAAATATAAGATAAAACATGCATTTCACAAAGCTAAAGTCAGTCATTAATAAGCTAATTAGACAATTTCTGTTGTTTTTTTATACTGATATTTTACAAATAATAATAGAAAAT
Associated Phenotype:
Not determined