ZMP
zgc:162316
Ensembl ID:
ZFIN ID:
Description:
CCR4-NOT transcription complex subunit 2 [Source:RefSeq peptide;Acc:NP_001082993]
Human Orthologue:
CNOT2
Human Description:
CCR4-NOT transcription complex, subunit 2 [Source:HGNC Symbol;Acc:7878]
Mouse Orthologue:
Cnot2
Mouse Description:
CCR4-NOT transcription complex, subunit 2 Gene [Source:MGI Symbol;Acc:MGI:1919318]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa38099 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa44329 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa38099
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000088383 | None | None | 520 | None | 15 |
| ENSDART00000134072 | None | None | 110 | 1 | 4 |
| ENSDART00000139965 | Essential Splice Site | None | 174 | None | 6 |
| ENSDART00000148366 | None | None | 188 | None | 4 |
Genomic Location (Zv9):
Chromosome 25 (position 29546537)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 25 | 28236631 |
| GRCz11 | 25 | 28679833 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAATGCACTTTAAAGCGGCTTATATAGCCTTGGGTCTTGTTCTGCAGTGG[T/A]AATTCATTATTTATTACTAGTTCTCAGTGTTGCTGTGTAGAAGAACTTGT
Long Flanking Sequence:
TCAAAGCTAACTAGCCTGTATGAATTAGAACATTTCGCTTCATGCCATTCATTATTTTATTCCTTTCTCACTGGAATTGGGCTCGTAACGACTTATCATTCAGAAACGAGCTTTAATGTTATTTAAAAAGTTACGATATTTAGAATTGCGAGTGCTGAAATGTCTGGCTAGTAATTGCTGTTTCTTCATGGATTTAGCTGGTGTATTAAGCTGATTTTGTGCTTGTTGTCAGGTGTCAGTTTAGAGAGCGACATTTGTTTGTTTTCCAACCACGCGACAAGTATCTGCTTTGTTTTGAATAGATGAAAACATTATTAATTCAACAACGCACCGCCATAACAACAGTATCCACTCATAGCATGATGCTGTTCGCGAAATTATAGCAAAGTTTTATCGTGGACATCCTTAATGCAAGACTTTGTTTGACAAAAGACCCTGTACTTTTTTTCTTAATGCACTTTAAAGCGGCTTATATAGCCTTGGGTCTTGTTCTGCAGTGG[T/A]AATTCATTATTTATTACTAGTTCTCAGTGTTGCTGTGTAGAAGAACTTGTTTTTGATGTTCAGCTGATGTGAGCAAAGATAACTTGCTATGATTTTGGTTTAAAAGTAGATTCTCAGGAATGAAGATATCTTGTTTTTAACCATGTCTTCTTCTTCTGTAGGTGACAAACGGAATGTTCGGTGCAACGAGAAAGAAGTTTGATGGGGTCGAAAGTGACTACCCTGATGAGAGCATGTACTATAACCAGGCATCTATGTTCCAGCATCGATCGGAGAAAGACGTAAGAACAGTTTGTCATTAGTTGTGAATTATGTCTGTTTATGTTGAATGAAAGCCTTCTAGCAATTCCATGCAAACGCCAGCCTTGCCATAAACCAAAATAGTGAAAACCTTCCTAATTTTTTAGTACACTGTAAAAATTGCAGGGTTCCACACAATTTATTAAACGCAAATAGATTAACGCAAACAATTTAAGTTGATTTAACATAAAGCAATTACG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44329
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000088383 | Essential Splice Site | 197 | 520 | 6 | 15 |
| ENSDART00000134072 | None | None | 110 | None | 4 |
| ENSDART00000139965 | None | None | 174 | None | 6 |
| ENSDART00000148366 | None | None | 188 | None | 4 |
Genomic Location (Zv9):
Chromosome 25 (position 29560050)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 25 | 28250144 |
| GRCz11 | 25 | 28693346 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGGGGTTTGGAATGAACTCCTTATCCAATAACATCTTCAACGGGACAGG[T/C]GAGTGATGTTCATGACAGGAAACACGAGTGTGTTTTAGAAAGAGGAAGTA
Long Flanking Sequence:
TTTCTCAAATTAATTTTCGTTTTGCAATTTTTGGAGATTTGCATTAATTAATTTATTTGTTGGTTATTACTTTATTTTTGTTGGCAAACCTTTTTTTTATTTTGCAAATATATATGGCCCTAGATTGACTCCATAGTCCTGCTTATTGTCGAGCTCTGTTTATATACTTTTTGTATTACCCAATTGACAGGCCAACATGATGTATCAGGGTTTTTATAAGCAAATGAACTCACATGAATCCTTTTAGAATCTCAGTACACGAATCTGTTTATTGCCATAATAAAGCTGGTTTTGATTAAAAGGGTGACTTCTTATCTTAAATACATATTATCTATTTGAATTAACTTTCACCTTAGGCCAAGATAAGGCCAATCAAGACTGATCTTAACAAAAGGGTCAAATCCTCATGTGTGTCGTTGTAGTATGTCAGGATTTGGAATGGGCCGGAGCCAGGGGTTTGGAATGAACTCCTTATCCAATAACATCTTCAACGGGACAGG[T/C]GAGTGATGTTCATGACAGGAAACACGAGTGTGTTTTAGAAAGAGGAAGTAGTTTATTCTTATATCATTTTTGTTTCACTCTACTATTATCTTTGGCAGATGGGAGTGAAAACGTGACAGGAATAGATCTCTCAGAATTCCCAGCACTTGCAGACAGAAGTCGGAGGGAGGGAAATGGCAACCCTACACCGTTGCATAATCCACTGGCTGGAAGGGCGCCCTATGGTACCAGTTCATTTTACACAGTTCCATTAGTTAGCTGAAACTGAAACCCTCTTAGTCTTTATGAACAAGCACGCTTCTACTTGAATGGATGATATGTTGTGAATGCATGCCAAGGTCAGTGGTTTTATTTTTATTTTCAGACAATATCCCTCAAAGGTTTGTTAAAATGTGTTTGTGTGCAGTTGGAATGGTCACAAAGCCATCGAACGAACAGTCGCAGGACTTTTCAATTCACAACGAAGACTTCCCAGCCCTGCCTGGCCCCAACTATAAGGA
Associated Phenotype:
Not determined