Busch Lab

ZMP

lss

Ensembl ID:
ENSDARG00000061274
ZFIN ID:
ZDB-GENE-050119-7
Description:
lanosterol synthase [Source:RefSeq peptide;Acc:NP_001077036]
Human Orthologue:
LSS
Human Description:
lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) [Source:HGNC Symbol;Acc:6708]
Mouse Orthologue:
Lss
Mouse Description:
lanosterol synthase Gene [Source:MGI Symbol;Acc:MGI:1336155]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa34708 Nonsense Mutation detected in F1 DNA Not yet available
sa7203 Nonsense Mutation detected in F1 DNA Not yet available
sa41487 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa8616 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa8442 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa34709 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa34708
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000087241 Nonsense 235 735 7 22
Genomic Location (Zv9):
Chromosome 9 (position 39538414)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 38676310
GRCz11 9 38486105
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTTGCCCTCCTGGATGCCAGCACACCCCTCCACATTATGGTGCCACTGT[C/T]GACAGGTCTACCTGCCCATGAGCTACTGCTACGCAGTCAGGCTCTCTGCT
Long Flanking Sequence:
ATACAGCTTAAAGTGACATTTAAAGGCTTAACTGGGTTAATTAGGTTGACTAGGCAGGATAGGGTAATTAGGCAAGTTTTTTTTATAACAGTGGTTTGTTCTGTAGATTGTCGAAAAAATATAGCTTAAAGGGGCTAATAATTTTGACCTTAAAATGGTTTTTTAAAAATTTAAAACTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAATATATTATCCTGTGGATTATACTGTGAAATTTTCCATCAATTGGGAAATATTTAAAAAAGAAAGAAAAATTTCAAAAGGGGGCTAATAATTCTGACTTCAACTGTATATGTGTATATGTTCAACTGTATATGTGTATATGTTCAACTGTATATGTGTATATGTTCAACTGTATATGTGTATATGTTCAACTGTATATGTTTTTGTGGTTTGTTTCATTAGGCTTTTGCCCTCCTGGATGCCAGCACACCCCTCCACATTATGGTGCCACTGT[C/T]GACAGGTCTACCTGCCCATGAGCTACTGCTACGCAGTCAGGCTCTCTGCTGATGAAGATCCTCTGGTGCTCAGTTTAAGACAGGTGTAGTTTCAGAGTTTTACCTCTAGGGGTGGGAAGCACTACAGTCTCCACAATACATATGGACCCTGTTCACATTTCTGGATTTCTCTCATTAGCGGAAGTCGTCATAGTGGGGTAAACCTAGAGTGCAGTGAACAGGAGAGTAAAACAATTAATGTTTTTACAATCCTATTTCCTGAAATAGTTATTTAACGATGGTGTTATCAAGACTTCAGAAAAAGAAAATAATTTGTATGATACTGATGCTAGAACAGCAGCCAGAAGATAGAAGAACGTAAATTTTAGTGTCCTGCAACTCTGCATTTCAAATGCTCAAGCTTTAATTAGTTTTTTGTAATTTGATACAAAGATAATATAATATATAGGCAACTTGTACATGCGTTCTTTCAAAAATCAAAATATTAAAAACTTTCAAGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa7203
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000087241 Nonsense 284 735 8 22
Genomic Location (Zv9):
Chromosome 9 (position 39540745)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 38678641
GRCz11 9 38488436
KASP Assay ID:
554-5331.1 (used for ordering genotyping assays)
KASP Sequence:
GATTACTCCACTATTGACTGGCCAGCTCAGAGGAACAACGTTGCARCCTG[T/A]GATTTATACACACCRCACAGCAACTTGCTTACTTTCGCTTATTGTGAGTG
Long Flanking Sequence:
TAATGTGCACATTGCTGTATTGATTCATATACCAGCAGCCCTACCATTGATTAAAGCTTATAATTGAATTTCATAAAACCTTAAGACAGAGGTCTCCAACCCTGCACCATGGGGGACACCCACTATTCTATGAATTAGTTGAATTCCAGCACTAAGAAAACACACCTAAATCAGCTAATCAATCTTCTGGATCATTTGTACATTCGTAGGTAGGTATGCTGATGCAAATTAATCGAAAAGAACCTCAGTTTTTGCCAAAAATCTTTAATGTTTTACTTTAGAAAAAACTCTCCTACATTTTGTGTGGCCTAATATAAATTCTTAGATTTTTGGATGAGCTATGTATCTGTATAGTACATGATGACAGAATAACAATCTAATTCAGAATTCAATCTAGACACACCAATCCAGATGTTTTTCTTGTGTTTGAAACAGGAGCTCTACGTCCAGGATTACTCCACTATTGACTGGCCAGCTCAGAGGAACAACGTTGCAGCCTG[T/A]GATTTATACACACCACACAGCAACTTGCTTACTTTCGCTTATTGTGAGTGAGAGAAGTATAACATCACTTTAAAAGGAATTAAAACCTTTTGATTGCCATATAACTAATTAAAACCTTATCGTGCAGTTTTCCTGAATGTGTACGAAGCTCATCACAGCACTATACTGAGAGAAAAAGCAGTGAAGGAGCTGTATGACCACATTAAAGCAGACGATCGCTTCACAAAATGTATCAGCATCGGACCGGTGAGTGAAAAAGTAATTGTGTGCTGTGTAAAGTATGAAGTCCTCTTGAAATCAATGCATGTGCCTGATCCTATCGTGTGAATCTGTGCATGTTTAGTATTATTTTGTCAAAAATATTTACTATTTCTTGACCGTAATACTGTCTTTTTTTTTAGATCTCAAAAACGATCAACATGTTGGTACGCTGGTATGTAGATGGACCAACTTCACCTGCCTTCCAGAAGCACGTTTCAAGGATTCCTGACTATCTGTGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41487
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000087241 Essential Splice Site 490 735 15 22
Genomic Location (Zv9):
Chromosome 9 (position 39543450)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 38681346
GRCz11 9 38491141
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCTCAAAGAGAACATTCCCAAGGAAAGGCTTTTTGATGCTGTCAATGTG[G/A]TAATAACCTTACTTGTGTATATACTGTCTGTTTTGAATGCTGACATAAGA
Long Flanking Sequence:
TTAATCACATCACTAATCAAATTTGCACAAATCTGAAATATTCTTTACTTGTGTCATTTTGAATTTGAATGACCTCATTTGAAATAATAATACAATATTAAAAGCATTTTGTTGTGGTATCAGAATTCTGTTGCACTTCTGTATTTCTGTAGTAATCTTTGGGTCTCCATGTAAGCTCTAACCAGTTTCCCATTATTGTAGGTCAAAGATAATCCTCCAGAATATGAGAAATACTATAGACAAATGAACAAGGTAAACATTTAAGTCTAACATGTCAACTTTATTATTAAGCATTTTTAATTTGCACTTATCCACATTCATAAGCATATGTGTGTATGTGTCTGATGTAGGGAGGCTTTCCCTTCAGCACACGGGACTGCGGTTGGATAGTTGCTGACTGTGTGTCAGAAGGGCTGAAATCTGTGATGCTTCTGCAAGAGCAGTGCAATTTCCTCAAAGAGAACATTCCCAAGGAAAGGCTTTTTGATGCTGTCAATGTG[G/A]TAATAACCTTACTTGTGTATATACTGTCTGTTTTGAATGCTGACATAAGATTTACAGTAAAATGCTATGCTATCAGTATTACACGAATGTTAGACCCTGTTTGGTGGGCCATGAGTCTCTTTGTAGGAAGTCAGTCCCTCAAAAAATGAGCTTTCTTTGTGTTAAATTCAAACAGAGAGTTCAAATACAACATAACAATGTTAAGTGTTTATAGGCTCATAATATGTAGTTGACAGAGGGCTTTTTAAAAACTCTTTCTTTTTCATTTAGTGCTAAAACTTTGAGCTGAAATTAAGATAACCCTTTATTTATTTAATATATTTTAAATGTAAAATCTTCAGTGTCAGAAATCCTTCTAAAATGCTGATAAAAAAATTTAAATAATAGGAAAATCATGGTGAATTTTTTTAGGAATCATTAAACATTTGACATTATAGATATATAGATATTTTTAATATATATCCAGTTGAAAGCAAAATTATTAGCTGTCCTGTGATATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8616
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000087241 Essential Splice Site 490 735 15 22
ENSDART00000087241 Essential Splice Site 490 735 15 22
Genomic Location (Zv9):
Chromosome 9 (position 39543451)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 38681347
GRCz11 9 38491142
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCTSAAAGAGAACATTCCCAAGGAAAGGCTTTTTGATGCTGTCAATGTGG[T/A]AATAACCTTACTTGTGTATATACTGTCTGTTTYGAATGCTGAMATAAGAT
Long Flanking Sequence:
TAATCACATCACTAATCAAATTTGCACAAATCTGAAATATTCTTTACTTGTGTCATTTTGAATTTGAATGACCTCATTTGAAATAATAATACAATATTAAAAGCATTTTGTTGTGGTATCAGAATTCTGTTGCACTTCTGTATTTCTGTAGTAATCTTTGGGTCTCCATGTAAGCTCTAACCAGTTTCCCATTATTGTAGGTCAAAGATAATCCTCCAGAATATGAGAAATACTATAGACAAATGAACAAGGTAAACATTTAAGTCTAACATGTCAACTTTATTATTAAGCATTTTTAATTTGCACTTATCCACATTCATAAGCATATGTGTGTATGTGTCTGATGTAGGGAGGCTTTCCCTTCAGCACACGGGACTGCGGTTGGATAGTTGCTGACTGTGTGTCAGAAGGGCTGAAATCTGTGATGCTTCTGCAAGAGCAGTGCAATTTCCTCAAAGAGAACATTCCCAAGGAAAGGCTTTTTGATGCTGTCAATGTGG[T/A]AATAACCTTACTTGTGTATATACTGTCTGTTTTGAATGCTGACATAAGATTTACAGTAAAATGCTATGCTATCAGTATTACACGAATGTTAGACCCTGTTTGGTGGGCCATGAGTCTCTTTGTAGGAAGTCAGTCCCTCAAAAAATGAGCTTTCTTTGTGTTAAATTCAAACAGAGAGTTCAAATACAACATAACAATGTTAAGTGTTTATAGGCTCATAATATGTAGTTGACAGAGGGCTTTTTAAAAACTCTTTCTTTTTCATTTAGTGCTAAAACTTTGAGCTGAAATTAAGATAACCCTTTATTTATTTAATATATTTTAAATGTAAAATCTTCAGTGTCAGAAATCCTTCTAAAATGCTGATAAAAAAATTTAAATAATAGGAAAATCATGGTGAATTTTTTTAGGAATCATTAAACATTTGACATTATAGATATATAGATATTTTTAATATATATCCAGTTGAAAGCAAAATTATTAGCTGTCCTGTGATATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8442
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000087241 Essential Splice Site 490 735 15 22
ENSDART00000087241 Essential Splice Site 490 735 15 22
Genomic Location (Zv9):
Chromosome 9 (position 39543451)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 38681347
GRCz11 9 38491142
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCTSAAAGAGAACATTCCCAAGGAAAGGCTTTTTGATGCTGTCAATGTGG[T/A]AATAACCTTACTTGTGTATATACTGTCTGTTTYGAATGCTGAMATAAGAT
Long Flanking Sequence:
TAATCACATCACTAATCAAATTTGCACAAATCTGAAATATTCTTTACTTGTGTCATTTTGAATTTGAATGACCTCATTTGAAATAATAATACAATATTAAAAGCATTTTGTTGTGGTATCAGAATTCTGTTGCACTTCTGTATTTCTGTAGTAATCTTTGGGTCTCCATGTAAGCTCTAACCAGTTTCCCATTATTGTAGGTCAAAGATAATCCTCCAGAATATGAGAAATACTATAGACAAATGAACAAGGTAAACATTTAAGTCTAACATGTCAACTTTATTATTAAGCATTTTTAATTTGCACTTATCCACATTCATAAGCATATGTGTGTATGTGTCTGATGTAGGGAGGCTTTCCCTTCAGCACACGGGACTGCGGTTGGATAGTTGCTGACTGTGTGTCAGAAGGGCTGAAATCTGTGATGCTTCTGCAAGAGCAGTGCAATTTCCTCAAAGAGAACATTCCCAAGGAAAGGCTTTTTGATGCTGTCAATGTGG[T/A]AATAACCTTACTTGTGTATATACTGTCTGTTTTGAATGCTGACATAAGATTTACAGTAAAATGCTATGCTATCAGTATTACACGAATGTTAGACCCTGTTTGGTGGGCCATGAGTCTCTTTGTAGGAAGTCAGTCCCTCAAAAAATGAGCTTTCTTTGTGTTAAATTCAAACAGAGAGTTCAAATACAACATAACAATGTTAAGTGTTTATAGGCTCATAATATGTAGTTGACAGAGGGCTTTTTAAAAACTCTTTCTTTTTCATTTAGTGCTAAAACTTTGAGCTGAAATTAAGATAACCCTTTATTTATTTAATATATTTTAAATGTAAAATCTTCAGTGTCAGAAATCCTTCTAAAATGCTGATAAAAAAATTTAAATAATAGGAAAATCATGGTGAATTTTTTTAGGAATCATTAAACATTTGACATTATAGATATATAGATATTTTTAATATATATCCAGTTGAAAGCAAAATTATTAGCTGTCCTGTGATATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa34709
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000087241 Nonsense 531 735 17 22
Genomic Location (Zv9):
Chromosome 9 (position 39547013)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 38684909
GRCz11 9 38494704
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AATTCCTGTTAAATGTCTCTTTCAGGTGATATAATGATTGACTACACGTA[T/A]GTTGAGTGCACCTCAGCTGTACTGCAGGCATTGAAACATTTTCACAGCGT
Long Flanking Sequence:
TTCCAATAGTGAAAGTTATTTATTTTCACATCTTTATAAGAAACAAGTGACTGTTCTTTTTAGGCAATGTGTGTTTTAATTTCAGTCATTCAGCATTGATGATCAATAATAATTATAGATGGTAGATGTGTGTGTTTCCTTTAGATATTTTAAAATCAAGTAATGCAAAAATCTCTCACTTGTAATTTGGGGGCATATTTACTGTAGAAAACCTATCAGTGAACTATGAGGGCAAAAAAATAAATTGCCCAGCCCTATCTTAAGCTTTGAGCATTAATGTAATTTTTCTGTGTCAGCTGTTGAGCATGAGAAACCCTGATGGAGGCTTTGCCACGTATGAGACGAAACGTGGCGGGAAACTGCTGGAGCTGCTGAACCCGTCTGAAGTATTTGGTGAGCGTGCATTAAAATACCGTATTTAGCTGTCAGGGCATTTCCTATTAGATTTAAAATTCCTGTTAAATGTCTCTTTCAGGTGATATAATGATTGACTACACGTA[T/A]GTTGAGTGCACCTCAGCTGTACTGCAGGCATTGAAACATTTTCACAGCGTATATCCTGAGCACAGAGCAGAAGAGATCAGGTATACACAGACACAGCATCTCAGTATTTTTGTTTAAATAAAAAATACCCAACATTACAGTAAAGCAAAAAAAAATAAAAACATATATCTATAATGAGTTGTGAAGAATGGTTTGGTTGAAGCTTGTCTCTTGTTTTTTTATAGGAGCACTCTTCAGCGGGGGCTGGACTACTGCAGGAGGGTTCAGAGACCTGATGGCTCATGGGAAGGGTAGGCGTTGATTCATTTATAACAAAGTCCTACATCTTAAAAAAAATGTTTCTTGCTAATTTGACCTAATCTAATGATGAAATTTAATGTGTGAACGACAATTTCACACAGACTTGAATTAAATGTTTTCTATATAAAGATGTAAACATTTTGACATTAGTTTAAATTTAAATGCATTCCAACGTACACAGTGTATATACAGTTGAAGAA
Associated Phenotype:
Not determined