ZMP
si:ch211-209p5.2
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to vertebrate latrophilin 3 (LPHN3) [Source:UniProtKB/TrEMBL;Acc:A8E7J9]
Human Orthologue:
LPHN3
Human Description:
latrophilin 3 [Source:HGNC Symbol;Acc:20974]
Mouse Orthologue:
Lphn3
Mouse Description:
latrophilin 3 Gene [Source:MGI Symbol;Acc:MGI:2441950]
Alleles
There are 6 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa24843 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa11206 | Nonsense | Available for shipment | Available now |
| sa11727 | Nonsense | Available for shipment | Available now |
| sa19494 | Nonsense | Available for shipment | Available now |
| sa19493 | Essential Splice Site | Available for shipment | Available now |
| sa19492 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa24843
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000042366 | Nonsense | 3 | 162 | 1 | 3 |
| ENSDART00000086797 | None | None | 1346 | None | 19 |
| ENSDART00000144208 | Nonsense | 3 | 1516 | 2 | 21 |
| ENSDART00000146871 | None | None | 1098 | None | 16 |
Genomic Location (Zv9):
Chromosome 1 (position 21884896)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 22420063 |
| GRCz11 | 1 | 23110802 |
KASP Assay ID:
554-7821.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTGTCCTTTCTTTTTTAGGTGTGCGCGTCAGAAAGAAGCGCAATGGCTT[T/A]AACGTGTCCGAGACGCAGCTTCAGCGAGTCAGTGCAGAGGTCAACAGGGT
Long Flanking Sequence:
ATAATATTTGACTAGATATTTTTCAAGACACTTCTATACAGCTTGAAGTGACATTGAAAGGCTTAACTAGGTTAATTAGGTTAACTAGGCAGGTTATGGTAATTAGGCAAGTCATTGTATAACAATGGTTTGTTTTGTAGACTACCAAAAAAAAATAGAGCTTAAAGGGGCTAAAAAAATTGACCTTGAAATGGCTTTAAAGCAATTAAAAACTGCTCTTATTCTAGCTGAAATAAAATACATAAGCCTTTTTCCAAAAGAAAAAAATATTATCAGACATAGTAGTGAAAATGTCCTTGCTCTGTTAAACATCATTTATATATATATATATATATATATACACACACACACACACACACACAATTGTGATTTTTTTTTTGTTATTTTTAACACTATGTACAAGAAAAGTGACCTTTAGCTGTAGCATTAACATTCTCTTTGCTCGCTGTGTTTGTCCTTTCTTTTTTAGGTGTGCGCGTCAGAAAGAAGCGCAATGGCTT[T/A]AACGTGTCCGAGACGCAGCTTCAGCGAGTCAGTGCAGAGGTCAACAGGGTCATCGGCGGTCATGTGGTCCACACGCCTACTTTTCTTCTTCACCCTCTTCACACCCGTCACGCTCGGTAAGACGCACACTCTGAGAAAAAAAAGCCAATTATTCCCTTGTTTTGTTGTTTTCCAAGAGATGGATGAATAAGATGTCTTACTGCTTTTATTTGATTAGTTGGCCCCCCAACCTTGAAGTGCAAACTGTCAGATGAAGACGAGGCAAATGAGAGCGAAGCGCACAGCTCTGAAAATTCCACAAAGTTTTTTTTCCCCGTCTTATTAAAAGTTTTGGAAAGTATTAATTGAGACATCTCTTCTCTGAGCAATAAATGATTCATGAGCAATCACCGAATTTCACAACCGCTGCACATCCGTTATGATCAAAACATTCACACATACACGGCGCACATATGGGGGAGAGAAAGTGGAAACACACAAACAAAAACAACTCCAAAGCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11206
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000042366 | None | None | 162 | None | 3 |
| ENSDART00000086797 | Nonsense | 3 | 1346 | 1 | 19 |
| ENSDART00000144208 | Nonsense | 192 | 1516 | 5 | 21 |
| ENSDART00000146871 | None | None | 1098 | None | 16 |
Genomic Location (Zv9):
Chromosome 1 (position 21846727)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 22381894 |
| GRCz11 | 1 | 23072633 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
RTGGTGTAAGGACCCCTTACAGTCATCCAATAAGATCTACTACATGCCCT[G/A]GACACCGTATCGCACAGACACACTGACTGAGTATTCAWCTAAGGAGGACT
Long Flanking Sequence:
TCCAATCAGCCAATCAGAATTAAGGGATACATTTAACGTTTATGTTTACAGTTAGGTTTATGGACTTCTACATGTTTGTTATCCAACTGATTTTGGAAACAATTTACAGTTATGGTTGGGTTTAGGGGTAGGGAATAGGTATGGATTACATTTTTGAACAAATATGATGTTCCAGGATCAATGTAGATGTTGATCCAGGATCGCACCGTACTTGGCAAAATCATGACGTGCGATGTGATATGTGAATGGCCCCTAACAATGCCCTCTACCATAAAGCAGTGTCTGCTTCTGTCCATGTCAGTGAAAGAATAAACTAATTACTAATGCATTCTATTTAAATGTGTGAGACCTCACTGTGTCTCTTCCCTTTTCAGTCTTTCTCTGCCCAGGTGTATTGAGAGGCGTGTACCAGAGTGAACATCTCTTCGAATCAGACCACCAGGCTGGATCATGGTGTAAGGACCCCTTACAGTCATCCAATAAGATCTACTACATGCCCT[G/A]GACACCGTATCGCACAGACACACTGACTGAGTATTCATCTAAGGAGGACTTTATTGCAGGTCGCCCTACCACCACATACAAACTGCCCCATCGGGTGGACGGCACTGGGTTTGTGGTGTATGATGGCGCGCTTTTCTTCAACAAGGAACGTACACGCAACATTGTTAAATTCGACTTGCGAACTCGTATCAAGAGTGGTGAGGCAATTATCGCTAACGCTAATTACCATGACACCTCGCCATATCGCTGGGGTGGAAAGTCTGACATTGATCTCGCAGTGGATGAAAATGGACTATGGGTGATTTATGCCACCGAACAGAACAATGGCCGAATCGTGGTCAGTCAGCTCAACCCCTACACACTCAGAGTGGAGGGCTCATGGGATACATCATACGATAAGAGATCAGCCTCCAATGCCTTCATGATCTGCGGAATCCTTTATGTCGTGAAGAGTGTTTACGAAGATGACGATAATGAAGCTCTAGGGAATAAAATTGACT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11727
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000042366 | None | None | 162 | None | 3 |
| ENSDART00000086797 | Nonsense | 321 | 1346 | 2 | 19 |
| ENSDART00000144208 | Nonsense | 510 | 1516 | 6 | 21 |
| ENSDART00000146871 | Nonsense | 92 | 1098 | 1 | 16 |
Genomic Location (Zv9):
Chromosome 1 (position 21814180)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 22349347 |
| GRCz11 | 1 | 23040086 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCACTGCTGAAATCTCCTGGCCACGGACACACCAGGGAMAAGYTGCTAAG[C/T]AACCGTGCCCACCTGGCACCATAGGTTAGTAAGAGAGTGATTAATCTATT
Long Flanking Sequence:
ATGTAGCTACACACATTTTTACTAATTTTTGCCAACCCAACCAAAAAAAACCCAAGTAATTTCATTTTTAAAGTTGAATTTTTTATAGTGTATAAGTTTGTTTAACATCCTTATAATAATCTTTTTTTTAATAGTAAATATCTGAGTGTTTCTGTAGTATGCAACAACTTTATAGTTCACATTCATTTGAACTGTAAGCGTTAAAAATCATTTCTATTTTTCTTCCAGATCCGCCTTCTTCAGTCTTGCTACCTGATCCTCTTCCTCCAGTACGCAGCTCCACGACTCCTCCACGCCCATATACAGGCACGCTCCGCCCCTCTCTCACCACTACCACGACGACCACCATGGTTCCTCCTCGCCGCCATAACAACGTCCTCCCAGAAGCCCTGACTCGAGCGCCTCCCTCCCCGCAGACTCCCGTCACTGTTGACTATTGTGCCCCACGTCTCACTGCTGAAATCTCCTGGCCACGGACACACCAGGGACAAGTTGCTAAG[C/T]AACCGTGCCCACCTGGCACCATAGGTTAGTAAGAGAGTGATTAATCTATTATTAGGGGCAGTGTGTGTGTGTGGAGGTTTATTTTGTTTAATGTGTATTGAATACATCAATGCATCAGCTCAGTGTGTGTCCGTGTGTGTATGTGCATTGCTCTCTGGCAGAGATCTGATACACTTCAACACTGCAACAAGGCTCCTGATAACATGAATGAAAGAATTAATTCGTAATTCAAGCCTGTAATTAATTTATCATCCCAGTGTTCAGGACTAAACTCATCATTAGTAATTCTTTATAATTAGGCACAACAATAGGAATTACCACTGTACTGATAGTTACATAGTCATTTATTTTTAAACCTGCAGTAAAACAAGTAGCCCCTAGATGTGTTTGCACATGATTATAATTGTCAAAATGTGGTATATATCAAAATTCCTGTGAAAAATAGACTACTTATCATTAGAAGGAAAGGAATTTGGGAGGAAAGAATGGAAGAAATGTTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa19494
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000042366 | None | None | 162 | None | 3 |
| ENSDART00000086797 | Nonsense | 462 | 1346 | 6 | 19 |
| ENSDART00000144208 | Nonsense | 638 | 1516 | 9 | 21 |
| ENSDART00000146871 | Nonsense | 220 | 1098 | 4 | 16 |
Genomic Location (Zv9):
Chromosome 1 (position 21794309)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 22329476 |
| GRCz11 | 1 | 23020215 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCTGCAGGTGCGATCTCAGGCGGCGTGGAGAGAGCTTTCTGTAGCCGAG[C/T]AGCTGCGATGCGCAACCATGCTCCTGGACACGGTGGAGACGGGAGCCTTC
Long Flanking Sequence:
TTCCCCCCGAAGGGGAACGTTCGAGGTTACTAAAGTAACCCTTCGTTCCCCGAGGAGGGGAACGGAAGCACTATACTCCGTCGCCATAATGACTGTCCCTTAGCTGTTGAAAGTCTCTTCAGCTTAAAAAGGATAGCGTCTGCTGCGCCAGGTGAGCTTATATACTCAGTTGATTGCTTATGCCGCTCACCTGCGCAGGCTTGCGCTGCCAATTCATTCTTAATTGGCCCGTTCAATACTCTTTCAGACGAGTAGCTTCTGAACCGAACCTCCCAATGCGTGGATTTTACAATCAAATCCACTTATAGTGCTTCCGTTCCCCTCCTCGGGGAACGAAGGGTTACTTTAGTAACCTCGAACGTTCAGTTGCCCCTCACCTCCCGGAACGCTGACATCTCTGTTTTTTTCCCCTTTCTGTTCTGCAGGCCATGGTGGAGACGGTGAATAACCTTCTGCAGGTGCGATCTCAGGCGGCGTGGAGAGAGCTTTCTGTAGCCGAG[C/T]AGCTGCGATGCGCAACCATGCTCCTGGACACGGTGGAGACGGGAGCCTTCATGCTCGCAGACAACCTGTTAAAAACAGACACCATACAGGAGAGCACAGACAACATCCGTGAGTTACCAAACATCCTCATCCTAAAGTTTTGGAATCAATCGGTGGTGCATATTTCATTCCTCTAATCAAGTCTCAGTCTTGTGTCTCTCTCTGATTGCTCTGATTTTTCTCCTGTCACAAGAAGACAAATAACAAGTTCATGAACAGATGGATCATTTTTGTGCAAAATGGTGGGCATAAGCAGGAAATTCCTGTTTCTGATACGTGACAGGATAAGAAACATAACAGCTTATGTGATTTTTAGAGGTCTGTCGGAGAATGTGTGCTGGATTTATGTAAAATAGTTCTAATGTCACAGTTACTTTATATACATAATAATTGGCAGCTTTTTTGCATGAATCTTTTAATCATCCATGTAGGGTTTTACTTCCGGCAAATTGTTTTAACGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa19493
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000042366 | None | None | 162 | None | 3 |
| ENSDART00000086797 | Essential Splice Site | 737 | 1346 | 11 | 19 |
| ENSDART00000144208 | Essential Splice Site | 913 | 1516 | 14 | 21 |
| ENSDART00000146871 | Essential Splice Site | 495 | 1098 | 9 | 16 |
Genomic Location (Zv9):
Chromosome 1 (position 21762256)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 22297423 |
| GRCz11 | 1 | 22988162 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGCTAGATAGTTTGAGCAGCGTTTGTGCTCTGTGTGTATGTCTTTGTTAC[A/T]GATCGTCTGCGCTGTGTTTGCGGCCCTGCTGCATTTCTTCTTCTTGGCTG
Long Flanking Sequence:
TTTGACATGCCCTTGTCACTGCATCACAATACGTTTTTCACATTTTCATCGAGACAGTTTTGTTTAAATGGTGGAAAAAACGTATATAAAAGTACCCATGTGTATGTAGACATGGCCAGAAAGAGCATTTGGAAGCAGAAAGTGTGACTCATGACGTCAGACTTAACAAGCGGATTGTCAAACACACATAATTCATTGAGTCGTTAAGTTGGGCACCTGACTCTTGTTAATTACAGAAATGGAGAGGATCTTTGACCTCTCGTTAATCGCAAAAACCTCACTGTGTCCTCAGAGAGAGAAAAAGAGTGGGAGGGAGACAGGAGAATATAAGCAAAGACAAATGGAAAATGACAAAGATAAAATGTTGGAAATCCATCGGGAAATTTCTAAAGTGATAACAGAACAGACGGTTAATGCTCAAAGCAGCGAGTCACAGATCACACAGATACTGGCTAGATAGTTTGAGCAGCGTTTGTGCTCTGTGTGTATGTCTTTGTTAC[A/T]GATCGTCTGCGCTGTGTTTGCGGCCCTGCTGCATTTCTTCTTCTTGGCTGCGTTTACGTGGATGTTTCTGGAAGGCGTACAGCTGTACATCATGCTGGTGGAAGTGTTCGAGAGCGAGTACTCGCGCACCAAGTACTTCTATCTCACAGGATATGGAGTGCCAGCTGTCATAGTAGCTGTATCGGCTGCTGTGGACTACCGTAGCTACGGCACTGAAAGAGTGTAAGTAAATGACAGATCTATTTCCCATGGTAAAATGCTTACATAGGGTCTAAATGTCACACTTTTTAAACAATCTCACCAACTGGTTAGGAAAATAGATATTTTCTAAACAGAAGGCAAAATTTTAGCTGCAGTTATAAAATGTAGATTGTGATAGGCATAATTATAAGCCCTCCTTCAAAATATTAATTAGTTTAAAATATTTTCCAAGTGCTGTTTAACACAGAGACAATTTTTTTTTAAATATACCTTTCAATACAGTTATTTTTTGCCACCTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa19492
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000042366 | None | None | 162 | None | 3 |
| ENSDART00000086797 | Nonsense | 805 | 1346 | 11 | 19 |
| ENSDART00000144208 | Nonsense | 981 | 1516 | 14 | 21 |
| ENSDART00000146871 | Nonsense | 563 | 1098 | 9 | 16 |
Genomic Location (Zv9):
Chromosome 1 (position 21762048)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 22297215 |
| GRCz11 | 1 | 22987954 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTGCCAGCTGTCATAGTAGCTGTATCGGCTGCTGTGGACTACCGTAGCTA[C/A]GGCACTGAAAGAGTGTAAGTAAATGACAGATCTATTTCCCATGGTAAAAT
Long Flanking Sequence:
TTGGGCACCTGACTCTTGTTAATTACAGAAATGGAGAGGATCTTTGACCTCTCGTTAATCGCAAAAACCTCACTGTGTCCTCAGAGAGAGAAAAAGAGTGGGAGGGAGACAGGAGAATATAAGCAAAGACAAATGGAAAATGACAAAGATAAAATGTTGGAAATCCATCGGGAAATTTCTAAAGTGATAACAGAACAGACGGTTAATGCTCAAAGCAGCGAGTCACAGATCACACAGATACTGGCTAGATAGTTTGAGCAGCGTTTGTGCTCTGTGTGTATGTCTTTGTTACAGATCGTCTGCGCTGTGTTTGCGGCCCTGCTGCATTTCTTCTTCTTGGCTGCGTTTACGTGGATGTTTCTGGAAGGCGTACAGCTGTACATCATGCTGGTGGAAGTGTTCGAGAGCGAGTACTCGCGCACCAAGTACTTCTATCTCACAGGATATGGAGTGCCAGCTGTCATAGTAGCTGTATCGGCTGCTGTGGACTACCGTAGCTA[C/A]GGCACTGAAAGAGTGTAAGTAAATGACAGATCTATTTCCCATGGTAAAATGCTTACATAGGGTCTAAATGTCACACTTTTTAAACAATCTCACCAACTGGTTAGGAAAATAGATATTTTCTAAACAGAAGGCAAAATTTTAGCTGCAGTTATAAAATGTAGATTGTGATAGGCATAATTATAAGCCCTCCTTCAAAATATTAATTAGTTTAAAATATTTTCCAAGTGCTGTTTAACACAGAGACAATTTTTTTTTAAATATACCTTTCAATACAGTTATTTTTTGCCACCTTCTGAATGATTTTGAGATATTAAGCTTTAAAGTTTTTGCATTCCATAAAGCAAACAATATGCGTGCAACAGTTGTCTTTCATACATTAACATGACAGACACCCTAAATATACTCTAAATGTAAATTATCAAAATGTTCTTACATTTGCAAATTGGGGTAAAAAAAAAACAGGGTAAACGCAGATAGAAGCTTCTTATATTAATTATATA
Associated Phenotype:
Not determined