ZMP
si:dkey-18f7.1
Ensembl ID:
ZFIN ID:
Description:
synaptonemal complex protein SC65 [Source:RefSeq peptide;Acc:NP_001119910]
Human Orthologue:
LEPREL4
Human Description:
leprecan-like 4 [Source:HGNC Symbol;Acc:16946]
Mouse Orthologue:
1110036O03Rik
Mouse Description:
RIKEN cDNA 1110036O03 gene Gene [Source:MGI Symbol;Acc:MGI:1913430]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa3020 | Essential Splice Site | F2 line generated | Not yet available |
| sa36812 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa3020
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000104451 | Essential Splice Site | 303 | 426 | 4 | 7 |
Genomic Location (Zv9):
Chromosome 19 (position 18169195)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 19 | 19014430 |
| GRCz11 | 19 | 18477283 |
KASP Assay ID:
554-3196.1 (used for ordering genotyping assays)
KASP Sequence:
AAATTTGKAGCCACAATGWTCCACTACATGCAGTTTGCTTATTTCAAATG[T/C]AAGTATTACACAAATAAACTCAGACACAGCTACTGTTAATCCTCCCAGAA
Long Flanking Sequence:
GGTTATGTGAATGAGGCTATAAAGCACACTGTTCCCTTTGAAGATTTACTGATGTGATGTGTCCTCGGGAGTTTTTTTCTCCACCTTCGTTTTTAGATGTCTCTGTTTTCCCCATCCACACTGACACAGAGCAGCAGCATTTTAAAATGAAAACAGCCTCTTTAGCGTTTCCAAAAAGCTCAGTTTTCAGCAATCGAAAACTCTGACATAATGTGGACGAATGGCGTAACCGTAGCAAAACTTATGCAGTTTTAAAACTAAAACGTATTAGTATAAATGGGGCCTAACTAAATATTCTAACACTGGTTTATGCAGTGAAAACATTTGTTTAAATTTAATGGCCTCTCTATCTGTCTCTTTTTTCCCCTAGAGTTGTATTTTGAAGTATTGCAGTGTAAAGTAAAATGTGAGGAGAATTTGATGCCCAATGTTGGTGGTTACTTTGTGGATAAATTTGTAGCCACAATGTTCCACTACATGCAGTTTGCTTATTTCAAATG[T/C]AAGTATTACACAAATAAACTCAGACACAGCTACTGTTAATCCTCCCAGAATGGAAAAATTTTAAAAGCATATTAAGTTAAATAGGCAAATATGCAATATGAAGTTTATTATCATTATGTCTGGTAGCTATGATTGCAAAGAAAAGTGTCAACAAGAAGACACCCACTATGTTAAAGATGTGATCCAGTCATGTTTCTTTAAAATTGATGAGGACTATTATATCCCTCCAAACTAGTCTTCTATTTCCATTGATTTTGAAAGTTTGATGACAAAATGTAGCTAGTTCTGTCATGACAACTCTAGATTTAGTATGGTTATAGATATGTATATAGACATGTTGATGCATTTGGTAGTTGTGGCATAGCTCTGTTATGCTGCTGCTTTAATTATTATGGCAGAGCAATTACCAAGACTTGCTACTTCCAGTATATTCACAGACATGCAGTCTGATTCTGTCAATTCGGTCTTACTAATTCTTGTTTTGGTGGTGTCCAGACATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa36812
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000104451 | Nonsense | 303 | 426 | 5 | 7 |
Genomic Location (Zv9):
Chromosome 19 (position 18133461)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 19 | 18978696 |
| GRCz11 | 19 | 18441549 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAATTAAAATGATGACCTAATTAATGTATTTTGTTTGTTTGTCCTTTAAG[T/A]AAATGATGTTCGCAATGCAGCATTGTGTGCAGCAACCTATATGCTGTTTG
Long Flanking Sequence:
AATGGGGGACTTCTCTATAGGCTCCATCAGATGTGGCCAGAATACTCTGTCAGTGCTGGACAGAAAATGCAGAACAGAGGATGACAAAATAATTTATTGTTAAGTTAACTAAGGCAGCTGTTGTTTTCCGGCTGTCACTGGGGGACTGCAGACTGGATTAAAGACAATGGAAAACTTCACCCTTGAAGATGGCTGGAAAGTACAGTGGAGTGAGGAGCAGGATGCAGAGAGAACCGCTGTTGCAGAGCGTGCTCCTATCAGCCTGTGCATGCATAGAGTTTCATGACAGAACTTTGTATTACCATCTATTTTTGAACTTGTAAATGCTATTACCTCTTTGTTTGTTGTATACCTCTTTATTTGATCAATTGTAAATCAAATTGAATAAAAAAACAAGATAAGTGTATTAACGAAGCATATAACACCTCCACTGAAACCACAAAAAGTCTATAATTAAAATGATGACCTAATTAATGTATTTTGTTTGTTTGTCCTTTAAG[T/A]AAATGATGTTCGCAATGCAGCATTGTGTGCAGCAACCTATATGCTGTTTGATAGAGATGATCAAGTGATGCAGCAAAACATGGCCTACTACAGATTCTACAGAGAACAGTGGGGACTGCAGGATGAGCATTTTAAACCACGTCCAGTAAGTAGAGATAAACGTACACAAACATTAGCTCATATGGAAATAAGAATTATTAATCAACTAGTTCTAATTAAACAGATATAAACAGACTAGATATATTTGTGAGTGTCTAAATCAGGGGTGGTCGAACTCAGTCCCGGCCCTGTCCTGCAGAGTTAGGCTTCAACTTTTTGCCACACAGGTTTCTAGTACATCTATTAAGAGCTTGATTAGCTTGCTTCCACATTTCATTCAGTTCAGTTCCAGTGCAGCATCGCAATTACTGTATGAGTACGGCACAGGAGAGGATGATATATTACTCTTGCTGTTTACAATAGTTTCCTCATATTACCGTCAAGGATATCCCATTCATGAC
Associated Phenotype:
Not determined