ZMP
ptcd3
Ensembl ID:
ZFIN ID:
Description:
Pentatricopeptide repeat-containing protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q32LU7
Human Orthologue:
PTCD3
Human Description:
Pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:24717]
Mouse Orthologue:
Ptcd3
Mouse Description:
pentatricopeptide repeat domain 3 Gene [Source:MGI Symbol;Acc:MGI:1917206]
Alleles
There are 5 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa42381 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa22457 | Essential Splice Site | Available for shipment | Available now |
sa14622 | Nonsense | Available for shipment | Available now |
sa17910 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa42381
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000080138 | Nonsense | 44 | 667 | 2 | 24 |
The following transcripts of ENSDARG00000057494 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 20080403)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 15845138 |
GRCz11 | 14 | 16150701 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTTTATTTATAGAAGTTTTGCAGCGTATCAACAACCTGATGTTTCTTCA[C/T]AAGGTTAGACGATTAGTTTCGGTCTCTTTGAAATAAAAGTTACAGCAATG
Long Flanking Sequence:
TCACAACCGGATGCTTGGTCATCGCATTTTGAGCGTCTAGGTGCCCTCTGCAGGACGATTTCATTTTGAGCGTCTAGGTGCCCTCTGCAGGACGATTTCGGTTGTACTATAGAAATAATTAAAAGCACTGTGAACGTGCAACGAAATTATTTTTAGGCACACGATTGGGTGTCATGGCGTCCTCCTGTTCGCAAGCTCTCAGGCATCATGCCTGTAAGAGTAGCAAAATATTGCGCATCCATCTGCAGAAGTCATGGACTAATAGGTAAGATAAATGTAAAAATATATATATATCAGGGCCTTTTTGGTCATTAATTTTTTTCTTGTAATCTCTACGTTTTTATAAAAATGACTGTTTGTCTCTAGGTCATTTCAAGGGGCTGTATCTGTCATATCGTATCTGCGAATTATTATCATCTTATCCGCTTTTATTAAACATGGTATTTATGTTGTTTATTTATAGAAGTTTTGCAGCGTATCAACAACCTGATGTTTCTTCA[C/T]AAGGTTAGACGATTAGTTTCGGTCTCTTTGAAATAAAAGTTACAGCAATGTGTTTTCAGAAATATCTATCTTTTAATCAAGTGTGTTTGTTTGTTTGTTTGTTTGTTTTAGAGGAAATAGTCATTCCAAAGAAAAAAACATGGTATGTAATATTCAGAAATGACCACACTAATGAAACCACTAATCAATTCACCTCAACTGATTTCTATTTTTAAGTTTGTAATAATGAGTAGTAATAATGAGTAATGAGTAATTACCTTCTTTATCAGGAGCAAAGAGGCTGTCTTGCAGGCACTGGCTTCCACTGTGAAAAGGGTATGTTAATCTGGTAATGCTAATATTCATTTTAAAAGCACAATGTCATGTAATGTCAATCGAATATTGTTATTGTGTGTCTGTGTGTTCAAGGATCCAACTGCATCAGATTACAGACTCCAGGATGATTCATTTCTCACTCCAAAAACAGCATCAGATTTTGTAAGTAACTTTATAATCGAACT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa22457
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000080138 | Essential Splice Site | 282 | 667 | 11 | 24 |
The following transcripts of ENSDARG00000057494 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 20071686)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 15836421 |
GRCz11 | 14 | 16141984 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCCAAGCATTTAGCACCTACACTGACCTGCTCAACAACCGACTTAAAG[G/T]TGAATATGCAAATACATTTACAGTTTATAAGATTTTATGGATCAGTAAAA
Long Flanking Sequence:
TTCAGGAAACGGTAATATATTCAGATGCTTCATGGTTTTAACAATATTAACAAGAACTGTTTTGAACATTTATACTTAGTTTTTTAAAAATGATAAAGATGTGTATTTATAATATTAAAATCGAAACCTTATTTTAAACAGTAATGTTTTGAATTTGACATCTTCTAACACTTTTGATGCCTATAATGTGTTTTCATCAGTTGAATGTGATCATGTTGAGCATTAAAAAAAATCTGTTATTTATTTTTTTTTTTTCAGAGAGAATAATAACGCTGAGAGAATTTTTGGGCTACTGTCAGAGCCGAACACGCGTTCATACAGCGCTCTTATCCGAGGCATGGTGAAGGTAACACACAAGTGAATTTCTGCTTGTTAAGTTTAATAGGTTTAGTTTAAATCCAGAATGGGACTAAAAGTGGGACTGTGTTTGATTTCTTAGCATGCTGCTTACACCCAAGCATTTAGCACCTACACTGACCTGCTCAACAACCGACTTAAAG[G/T]TGAATATGCAAATACATTTACAGTTTATAAGATTTTATGGATCAGTAAAAAGTAACAAACACACACACTTGTTTGCCCTTCTTCTGCTTCTTCTTCTTCAATAGCTGATGTCCACATCTTCAATGCCCTGCTCGCAGCCGTCCCTGCAGTCCGGCCAAAGTACAATGAAAAATGGGAACTGATACTGGTATGCAAGTTAGATTTAGTTATGAGGTCGCTTACTTAAAGGGTTACTTTATCCAAAAATGAAATATTAATTTCCTCATCCTCATGTTGTTCCAATTTTCTAACACCTTTATTGATCCTCAGAACATAAATTACGATAATTTTTTTATAAAATACAAAAGCTTCCTCATTCTCCTCAGACACCAATAGACCCCTTTTACAATGATCTCATTTCATTTATCCGCCTCTCCGCAACAAATACAGCTGCAGTCACAGACTAACCGTGTCTGTAGTAAATATACAGCTGACTGGTTGAGTTCTCAATGGGAAGTTCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa14622
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000080138 | Nonsense | 544 | 667 | 21 | 24 |
The following transcripts of ENSDARG00000057494 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 20059848)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 15824583 |
GRCz11 | 14 | 16130146 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTAATGCACATTTGTGTTTCTGTCCAGGTSCAGGAGTCATTTGCTGATTG[T/A]GCGCTGGACATAATGAAAATGTATGACACAAATGAGAGAGGCAAGGTCAT
Long Flanking Sequence:
GGTGTGTGTGTGTGTGAACTTTGTAAATGCATTGTGTGCGAGTCAGTGTCATCAACTCTTTAACTCCACATCAAATACATCAAATAATCATTGGTAAAGTTCTTACTGTAGTATTTCTCACAAACGTTACGTGAGATCTGCTTCCTTCATGTCTGTCACTGTGCTGTTCATCTGATGCCGGAGACTTGAGGCACACTCTGACAAGCACGTAGGAACAGTGGGCGGGGAGAACTAGCATTAAAACCACAGGCAACAAAAACCGTTACAGAACATTCTAATATTCTGAAAGCTATAATAAATAATCTGATGGGTGTTTTGAGCTGAAACTTTACAGACAAATTCTGGAGACACAAAAGACTTCTCTTAAATCTTGAAAAGGGGGTAAAATAGGTGAAAGTAATTGATGACTCTTTATATAAATTGTCTTATTTTCACACTTTGTATGCATCTCTAATGCACATTTGTGTTTCTGTCCAGGTGCAGGAGTCATTTGCTGATTG[T/A]GCGCTGGACATAATGAAAATGTATGACACAAATGAGAGAGGCAAGGTCATAATGAGCTGGACGGCCAGTTCTCTCAGTGACGTCACCACTATTCTACTAGCCGCTAACAGGAGACAAGAAGCCTGGTAAGCTCCTATATGGACAGCTGTAATGTCATCAAGATCTACAGTAATTGAGTTCAGCGCATCACTCATGAGGTTTTCTTCTTTAGGGAAATGCTGAAACTCTTCAGAACCCACAACAGAGTTCCCAGGTAAGAGAACAGGATCACAGTATTTTGAGCTGGGATTTTTGATAGCATTTCTTGGCTTGTTACAGTTTTGTATGGCCTCGCACACGTAATGCACAATTATGTAGTGCGTTAACTTTAAATTAGCTCAAAATGGAATATAAAAGAATTTACAGCGGCTTCAAAAGAATCAACTCTTTTGAACTGAACAAATGAATCATCCAACACTTGTTTAAACAGACAGTACTGTTGACTCTAAAATAAATGTATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17910
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000080138 | Nonsense | 586 | 667 | 21 | 24 |
The following transcripts of ENSDARG00000057494 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 20059723)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 15824458 |
GRCz11 | 14 | 16130021 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAGTGACGTCACCACTATTCTACTAGCCGCTAACAGGAGACAAGAAGCCT[G/A]GTAAGCTCCTATATGGACAGCTGTAATKTCATCAAGATCTACAGTAATTG
Long Flanking Sequence:
GTTACGTGAGATCTGCTTCCTTCATGTCTGTCACTGTGCTGTTCATCTGATGCCGGAGACTTGAGGCACACTCTGACAAGCACGTAGGAACAGTGGGCGGGGAGAACTAGCATTAAAACCACAGGCAACAAAAACCGTTACAGAACATTCTAATATTCTGAAAGCTATAATAAATAATCTGATGGGTGTTTTGAGCTGAAACTTTACAGACAAATTCTGGAGACACAAAAGACTTCTCTTAAATCTTGAAAAGGGGGTAAAATAGGTGAAAGTAATTGATGACTCTTTATATAAATTGTCTTATTTTCACACTTTGTATGCATCTCTAATGCACATTTGTGTTTCTGTCCAGGTGCAGGAGTCATTTGCTGATTGTGCGCTGGACATAATGAAAATGTATGACACAAATGAGAGAGGCAAGGTCATAATGAGCTGGACGGCCAGTTCTCTCAGTGACGTCACCACTATTCTACTAGCCGCTAACAGGAGACAAGAAGCCT[G/A]GTAAGCTCCTATATGGACAGCTGTAATGTCATCAAGATCTACAGTAATTGAGTTCAGCGCATCACTCATGAGGTTTTCTTCTTTAGGGAAATGCTGAAACTCTTCAGAACCCACAACAGAGTTCCCAGGTAAGAGAACAGGATCACAGTATTTTGAGCTGGGATTTTTGATAGCATTTCTTGGCTTGTTACAGTTTTGTATGGCCTCGCACACGTAATGCACAATTATGTAGTGCGTTAACTTTAAATTAGCTCAAAATGGAATATAAAAGAATTTACAGCGGCTTCAAAAGAATCAACTCTTTTGAACTGAACAAATGAATCATCCAACACTTGTTTAAACAGACAGTACTGTTGACTCTAAAATAAATGTATTGCTATTTGAAATAAAGAAAAAAAAAACACTAAAGAAACAAAAGAATTTTATGAAGTAGTCAGAACTGCTCTCGCAAAATGGAAAAAGAATTAGAATCGTAATACGTTGTTTTAGGGTTTAAGGTT
Associated Phenotype:
Not determined