Busch Lab

ZMP

lhx9

Ensembl ID:
ENSDARG00000056979
ZFIN ID:
ZDB-GENE-050417-210
Description:
LIM/homeobox protein Lhx9 [Source:UniProtKB/Swiss-Prot;Acc:Q1LWV4]
Human Orthologue:
LHX9
Human Description:
LIM homeobox 9 [Source:HGNC Symbol;Acc:14222]
Mouse Orthologue:
Lhx9
Mouse Description:
LIM homeobox protein 9 Gene [Source:MGI Symbol;Acc:MGI:1316721]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa14260 Essential Splice Site Available for shipment Available now
sa37520 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa3161 Nonsense F2 line generated Not yet available

Mutation Details

Allele Name:
sa14260
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054807 Essential Splice Site 126 396 3 5
ENSDART00000079556 Essential Splice Site 126 330 3 5
Genomic Location (Zv9):
Chromosome 22 (position 24978116)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 23236845
GRCz11 22 23251625
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAAATGTTTTCATCNNNNTATGTTTGATTGTAAATGGTGTGTGCTGTTCC[A/T]GAAGGTTCTCCGTGCAGAGATGTGCCCGCTGCCACCTCGGCATATCCGCT
Long Flanking Sequence:
CGTGTTTCGCAAAGGATGGCAGCATTTACTGCAAAGAGGATTACTACAGGTAAGCATTAACTTTGAGGCTTAAATCTTGCGTTAGGCCTGTTTAGTAGGCCTAACTTTTTTTTTCGAACACACATAAAGGCTGGTGACATCTGAGCTAGTGTAAGCCATTGACCCATATAGTGATCTTCAGTGATTAACTGACACGCCTAAATTAATCTAATAAACCTAATTAATTCATGCTCAGTGCGTCTATTTTTCTATTCAATTTTTAGCCAGTTGTTTTTTTTAAGGAAAACGAATTATGTCAGACTATAGAAGATACAACCATTTTTCCAAATAAATGTACACATATATAAATAATAGCAAATGCGTGCATTTAAAAGATTTTGATTAATAAAAATATCTAAATTTCACGTGCACCCGCTTTTTATATGTTAAACGTATTTGTTAATGACATACTAAATGTTTTCATCAATCTATGTTTGATTGTAAATGGTGTGTGCTGTTCC[A/T]GAAGGTTCTCCGTGCAGAGATGTGCCCGCTGCCACCTCGGCATATCCGCTTCGGAAATGGTGATGCGCGCCAGGGACTCCGTGTACCATCTGAGCTGCTTCACCTGCACCACATGCAACAAAACACTGACCACGGGTGACCATTTCGGCATGAAAGACAACTTGGTTTACTGCCGGGTTCACTTTGAGACCCTTATTCAGGGAGAGTATCACCCTCAATTAAACTACGCTGAATTAGCGGCCAAAGGCGGAGGGCTTGCGCTGCCTTACTTCAATGGCACCGGCACGGTGCAGAAAGGAAGGCCACGAAAGAGGAAGAGTCCGGCGATGGGGATTGACATCGGCTCTTACAGCTCAGGTGAGATGTCAATTTACAGCTGCTCAGTGGCGTTGCTCACCATTTATTTTGGTTTATTTCTGAGTGTTCGTGTTCGTTTTGTTAGCGGAGTAATTTGATTCTTAATTCGAATCTTTCGGCTTTCGAAAAAGACGATCAGGACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37520
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054807 Essential Splice Site 312 396 4 5
ENSDART00000079556 Essential Splice Site 312 330 4 5
Genomic Location (Zv9):
Chromosome 22 (position 24974474)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 23233203
GRCz11 22 23247983
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACTTAAAACAACTCGCCCAAAAGACAGGACTGACCAAGAGAGTTCTTCAG[G/A]TAAGAGTCGCCACACAGTAGACTCCATTTCACATCCAAACCGACACTTTT
Long Flanking Sequence:
GCTGAATTTAAACACGGTTGTGATCAATTTAATACTTTTTAGTGATAAAGGTTCTTCATTGATTAGATAACGAAATTCAAAAACTTTATAATGAAACATGGTTGTTTAGAGTGATAAAATGTTCATCTTGTGTATTTAAACATTGACAAAACATGAGAGCAAAGCTTTATAGTTTCATCTTGCACTGTATTTGAATCACCAATGTCTGGTCTGAACACTCATACTCACATTAAATATCATTTTGATCTTTGACAATAATCTAAATAATTCTCATTGCTTTATTTTCGCCCAATTTAGGTTGTAATGAGAACGATGCGGACCATTTGGATCGGGATCAGCAACCCTACCCTCCTTCCCAGAAGACCAAGCGCATGCGTACATCATTCAAACACCATCAGCTTCGCACCATGAAGTCCTACTTTGCCATTAACCACAACCCCGATGCCAAGGACTTAAAACAACTCGCCCAAAAGACAGGACTGACCAAGAGAGTTCTTCAG[G/A]TAAGAGTCGCCACACAGTAGACTCCATTTCACATCCAAACCGACACTTTTCATTGCACCCTTTGAGTTTCTGTTTGAAATCCATCCATCATTTTTTGATCATGTAGTTGCGGTTTAAATTTCAGAGGCTTAATTCAAGGGGCAATACTTATGCACCGAAAAAGAAAATCCATTAGGGATATTAATTTGGAGCATGGTCCATGTTTTTCAGTAGAATCCCTAGCAAAAGCAGAGGCCTTGTAGAGCCTTTCGATTCACTTTGGCATTGTTTAGTAGTGATTATCTTTGTGATGTTAACCCTCATAACACATTCTAAATATGTATTCTGTGTATGCATTCCAGGTCCGTTTGTTTCTGTAAAACAAATTTCTGCTTAACTTTAAAACTGAAAACGTAACATTTTATTTAAAAAAATCTTAGTTATTAGCAAATGTGTTAAAAGTGCAATGATACAATGTTATTACCATTTAACTACAATGTAATTGTACCATTTACCTTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa3161
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000054807 None None 396 None 5
ENSDART00000079556 Nonsense 315 330 5 5
Genomic Location (Zv9):
Chromosome 22 (position 24970146)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 23228875
GRCz11 22 23243655
KASP Assay ID:
554-2646.1 (used for ordering genotyping assays)
KASP Sequence:
TGCTCTGTAGTTTAATATATTGTTACTTTATGATTTTTTTTCAGGGAGAA[C/T]AAATCTTGGGGCATTACAGCCATACTTCACGACGTTTGAAAATTCCCTAA
Long Flanking Sequence:
AAGATTGTCCATGTTTCCTTGTTTCTTGAAAAAAAAGATGGTGTATAGAAACTATTTCCCCTTAAATATTTATGGACCAAACAGTTGTTATATCTTATTAAATTTGTGTGAATAAAACTACTTTGCTTTACCAGCGTTTTATTTTTCATTACACAAACCATTTTATTTGTGTGTGTGTGTGTTGCTTTCAGATTTAAACTTCTTCTCACAACCAAACAAAAATGACAGATCGAACCTTGTCTTGCTTTCATTCTGACATCGATTTCAGACTATATTCTGTTTCTGTTGTTAAAGTAATGCCCCATGGATTTGACCCAAAGCCCTGTAGTCAAGAAAAGATGCTTTTTAATGCATGAACATGGCTACTTTTTTCACAGAAATGCCAGCTTAGAAAGATCTTTTTTTTTTTTTTTTGAAAAACTAGTAAACATAAACCTCTCAAAGCAAGGTTGCTCTGTAGTTTAATATATTGTTACTTTATGATTTTTTTTCAGGGAGAA[C/T]AAATCTTGGGGCATTACAGCCATACTTCACGACGTTTGAAAATTCCCTAAAGTATTAAAAGAAGCTTTGATCGGAATTCTTCACCATTGAAGACAAAGACAGTATTAGGATCAGATTTTAGTCATTTCAAATCTACCAAAAAAGAAAATGATGTTTTCCAAAATCTTTTTGTTTTTCCTCTTTAAAAAACATCCTGAATGATTAAAAGCCTTCTTCTACAACAAATGGGATATTTTTTGTGACTGTAATGAGGCCAAAAGGCAAACTAAGCTGTACAGTATTGTAGATACGTAACAGAGCAACCTTGCTCCAAGAGGCGACTGCAGGAGACGGATCTACGCACGCATGCATGTCTACACACACACATATACACAAACTACCTTGTAATTCTGCTTGCTGTAAAACATTCCTGTGCAACAAATGTCACTTATCATGAACGCACAGCCTTCCTAAAACTTGGCAGGAAAATGTCCGACCAGGAGAAGCTGGAAAGGAACACC
Associated Phenotype:
Not determined