ZMP

ctcf

Ensembl ID:

ENSDARG00000056621

ZFIN ID:

ZDB-GENE-040624-5

Description:

transcriptional repressor CTCF [Source:RefSeq peptide;Acc:NP_001001844]

Human Orthologue:

CTCF

Human Description:

CCCTC-binding factor (zinc finger protein) [Source:HGNC Symbol;Acc:13723]

Mouse Orthologue:

Ctcf

Mouse Description:

CCCTC-binding factor Gene [Source:MGI Symbol;Acc:MGI:109447]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa14093	Nonsense	Available for shipment	Available now
sa45637	Nonsense	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa14093

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

G > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000059913	None	None	419	None	7
ENSDART00000079139	Nonsense	740	798	12	12
ENSDART00000124429	Nonsense	740	798	11	11

Genomic Location (Zv9):

Chromosome 18 (position 22072193)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	22302416
GRCz11	18	22291482

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TGACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATT[G/T]AGAACATCATTGTGAAGAAGGAGCCAGAGGGCACTGACGCAGTTGTAGCT

Long Flanking Sequence:

GATGACGATGATGATGACAGTGGTCAGTAGCTTGGCTTTTTTGTCTCCTTACTCCTCTATTAGTTTAACAATTGCCTGAACATGAAGTCAGATTGTTTGATCATCATTTAACTCGATGGGATCTTTATAATTTACATCATGGTCTAAATTACCCAGATGAGCATGGTGAACCTGACCTTGATGACATTGATGAAGAGGATGAGGATGACCTTCTTGATGAAGACCAGATGGGTTTGCTAGACCAGGCTCCACCCAGTGTTCCAATCCCCGCACCAGCTGAGCCACCAATCAAGAGGAAACGGGGCAGACCCCCTAAGAACGCACCCAAGGTCTCTCCTACCAAGTCCATTACCAAAACCACCACAGGTAATGTGTTCTCCACTGCATGTTAATGCAGACCTTTCAGAATCTTTTAGACAGGTTAAACTAAACGATTCTGTCTGTTTCTCCTGACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATT[G/T]AGAACATCATTGTGAAGAAGGAGCCAGAGGGCACTGACGCAGTTGTAGCTGCCCAGCCGATCATAGAGGAAGTGGAGGCGGTTGAGGCCGATGTAGAAACGGTGCAGTTAACAGTCCCAGAAGCTGCACCTAACGGTGATCTTACTCCTGAAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATACGTGTACACACACAGGCTGATCACCCATGCTTGCATAAATGCACATCCCCATATGCGTCCCTTGAATATATATATATATATATATCTCTATCTATTTACACATGCTCACATACTTCACTTTCCTCACCTCCTTTAATACTGCGCTGTGTCCTAATGTCCTGCATCAAGATTCTTAAGGACTCCATTATTCCACTGTTTGCTACAAAACCCCAAATGCCCGATGTCCTAAAGTTCTTACACAGTGTCTTCTCATGACGATCACAAAACTGAGCTTTTCTACTGTTCCCGTCACACCAGTAGTTCATTGTACG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa45637

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000059913	None	None	419	None	7
ENSDART00000079139	Nonsense	790	798	12	12
ENSDART00000124429	Nonsense	790	798	11	11

Genomic Location (Zv9):

Chromosome 18 (position 22072343)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	18	22302566
GRCz11	18	22291632

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CGGTGCAGTTAACAGTCCCAGAAGCTGCACCTAACGGTGATCTTACTCCT[G/T]AAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATACGTGTACACAC

Long Flanking Sequence:

ACCCAGATGAGCATGGTGAACCTGACCTTGATGACATTGATGAAGAGGATGAGGATGACCTTCTTGATGAAGACCAGATGGGTTTGCTAGACCAGGCTCCACCCAGTGTTCCAATCCCCGCACCAGCTGAGCCACCAATCAAGAGGAAACGGGGCAGACCCCCTAAGAACGCACCCAAGGTCTCTCCTACCAAGTCCATTACCAAAACCACCACAGGTAATGTGTTCTCCACTGCATGTTAATGCAGACCTTTCAGAATCTTTTAGACAGGTTAAACTAAACGATTCTGTCTGTTTCTCCTGACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATTGAGAACATCATTGTGAAGAAGGAGCCAGAGGGCACTGACGCAGTTGTAGCTGCCCAGCCGATCATAGAGGAAGTGGAGGCGGTTGAGGCCGATGTAGAAACGGTGCAGTTAACAGTCCCAGAAGCTGCACCTAACGGTGATCTTACTCCT[G/T]AAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATACGTGTACACACACAGGCTGATCACCCATGCTTGCATAAATGCACATCCCCATATGCGTCCCTTGAATATATATATATATATATATCTCTATCTATTTACACATGCTCACATACTTCACTTTCCTCACCTCCTTTAATACTGCGCTGTGTCCTAATGTCCTGCATCAAGATTCTTAAGGACTCCATTATTCCACTGTTTGCTACAAAACCCCAAATGCCCGATGTCCTAAAGTTCTTACACAGTGTCTTCTCATGACGATCACAAAACTGAGCTTTTCTACTGTTCCCGTCACACCAGTAGTTCATTGTACGTGGTGGGATGATTTTTTTTTTTGAGAGCAGAAGTGTGCTCGTGACATACATCTAGACTTTCTTTACCATGCTAACCAACCGTTTTCATTTGACAATTCAAATCTGACATTACCATGGCAATATTGAGAGATGATATATCATTTTGTGCCT

Associated Phenotype:

Not determined