Busch Lab

ZMP

cdh10

Ensembl ID:
ENSDARG00000055843
ZFIN ID:
ZDB-GENE-060614-1
Description:
cadherin-10 [Source:RefSeq peptide;Acc:NP_001034722]
Human Orthologues:
CDH10, CDH6, CDH9
Human Descriptions:
cadherin 10, type 2 (T2-cadherin) [Source:HGNC Symbol;Acc:1749]
cadherin 6, type 2, K-cadherin (fetal kidney) [Source:HGNC Symbol;Acc:1765]
cadherin 9, type 2 (T1-cadherin) [Source:HGNC Symbol;Acc:1768]
Mouse Orthologues:
Cdh10, Cdh6, Cdh9
Mouse Descriptions:
cadherin 10 Gene [Source:MGI Symbol;Acc:MGI:107436]
cadherin 6 Gene [Source:MGI Symbol;Acc:MGI:107435]
cadherin 9 Gene [Source:MGI Symbol;Acc:MGI:107433]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa15260 Nonsense Available for shipment Available now
sa25822 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa1332 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa15260
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000078232 Nonsense 8 785 2 12
Genomic Location (Zv9):
Chromosome 2 (position 28617713)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 28919348
GRCz11 2 28902881
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGTCATCGTGACRATCRWTTGGCTGCARTGATAATGAATCACTTCCTCTG[G/A]CTGCTTCCACTGGTCTTTCCGCACCTGAGCTCCCCAGTCATACTGCTAGA
Long Flanking Sequence:
TAATGCAGTAATTACTGAAAATCCACGGGTAAAACTCCAGCAATCCATAACAACAATCTGCCCTGATCATAACACAGACCTGCCTCAGTATTCCACCTTAACTGTGTTTACCGATGCAGGCGCTTCTGTTAATTGTAAGGGCATGTTATATGCAAGGTTTTGTGTGAGGCTACATGTTTGATCTTCTGTGAACAGAATAGTGCACGAAGGCCCAGTGGGATATATTCCACAAACAACAAAGAGATTACACTGTAAGAAACGAGTGTTGCATCTTGACAAGGGCTGCAGTGACCTCCAACACACTGTAACTTTTTCCCTTTGATTAATTTTTACAGGGAATCAAAGGAGGATCAAAGGCGATTCTACAATGTCAGGGTTGCTGATGTTGCCATCTACATCGCTTTCAATTCAGCGCTGCCTCGCCTTCTTAGCTTATTCATAAGGAGTCGCTGTCATCGTGACGATCGATTGGCTGCAATGATAATGAATCACTTCCTCTG[G/A]CTGCTTCCACTGGTCTTTCCGCACCTGAGCTCCCCAGTCATACTGCTAGAGAGGAATGATGGGAATCTCTTTCACAACTGGAGCTATCAGATGAAAGGAGATAAAATGGTGCTGCACAGATCCAAAAGGGACTGGATGTGGAGGCAGTTCTTCCTGTCGGAGGAATACATGGGAAATAACAATCAGTATGTCGGCAAGGTGAGCGTCCAAGATAACGCAGGCCCACAAGCCCCTATGTCAAGCAAAATAGTGTTTGGAGGAGATGCAAATGCCTGATTTTATTTATTTATTCATTTATGAATGGAGCAAGTAGCAATCCACACTCATACAGACTGGTTTTGCTGTTTTCATTTACATTTGTCAGGAAACAGACAGGTTTCAACACAAAGCCTTTCACTGTGTGTAGAGTAATTCAATCCTCTTTTTAAATCACCACTTATGTTGACGTCATCTTTACTTAGCGGATGTTCGATTATTACAAATATAGTAACAGTTTATAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa25822
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000078232 Essential Splice Site 332 785 7 12
Genomic Location (Zv9):
Chromosome 2 (position 28639148)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 28940783
GRCz11 2 28924316
KASP Assay ID:
2259-2115.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTTGTAATTACACTGTGCAGATATATGCAATGACTCATGGTCTCCATCC[A/T]GAAATTGGACTACGAAACCAAACGCGTTTACACTGTGAAAGTGGAGGTCT
Long Flanking Sequence:
GGGTTGCAGTCCTGGATTAATAAAAGGGACTAAGCTGAAAAGAAAATGAATAAATGAATGAATAATGAAGTAATTTTTCTTTCCATAATAGCACACACCACTAAAAATACGATTTCATGTAAATAAAAAGGATCAGTCTTGACTTTAAAAGCCATAAAAGACTTGAAATTAAGACTAAACTTTGGCAAAAATGACAATATCTATTTAAATTAAACATAATCTTTGTATTTTTCAAGGTTCTTACCACCTAAGCACTTATGAGTCGGCAGAAATCGGATCAACTGTGGGCCGAATCAAAGCCAATGATGGCGACGAAGGAGAAAATGCTGAGATGAAATACAGAATGTCTGATGGAGATGGGAAAGAATATCTGGATATAATAACAGATGAGATTTCCCAAGAGGGTGTCATCGTTATTAAAAAGGTAAAGCCCTGTTTCAATATTTATAAATTTGTAATTACACTGTGCAGATATATGCAATGACTCATGGTCTCCATCC[A/T]GAAATTGGACTACGAAACCAAACGCGTTTACACTGTGAAAGTGGAGGTCTCCAACACACACCAGGACCCCAATTTCTTTCATCTGGGCCCTTTCTCAGACACTGCCATTGTGAAAGTCACTGCCAGAGATGTAGATGAGCCTCCAGTCTTCAGCAGGACTCAGTACGTCTTTGAAGTCAATGAGGACACACCGAAAGGAACAGTAATTGGAACTGTTACAGCCCGTGACCCCGATGCCACAGATTACCCAATCCTGTAAGCATTTGAAATATTTAATAATTCAACAGCTACTGGAGGGAAATCACTAAAATGATTTGCACCCGCTGATGGTAGTTTATTTCCACATGCTGTCTGCATTGCAGCCGAATCACTAAACGAATTATGTAAATTAGATAATGGTACAAATGCTCCCTCAAATGCATTCATGGAGAGAAGTTCTGCTTTAGATAATATGGAAAAATTATTTCACTTGTTTTACATTGCTCAAGTGCCTAAATCGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1332
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000078232 Nonsense 633 785 12 12
Genomic Location (Zv9):
Chromosome 2 (position 28648655)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 28950290
GRCz11 2 28933823
KASP Assay ID:
554-1246.1 (used for ordering genotyping assays)
KASP Sequence:
CATATCTTCACTTTCCTCCAGTGATTGTGGTGCTGTTCTCGGCTCTGAAG[A/T]AACAGAGGAGAAAGGARCCCCTKATCATCTCGAAGGAGGACGTCCGGGAC
Long Flanking Sequence:
GATTACAATGGCTAACTTGATGCCAAACGTTGTTGCTATAAGTTTAATCTTACTAATATTTATAGCTATAATCTCACTGGGGCAGATGGTGGCCTCGTAGCAAGAAAGTTGCTTGTTTGAGTCCGGGCTAGGTGAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTCGTGTGGGTTTCCTCTGGTTGCCCTGGTTTACCCCACTGTCCAAAGACTTGCAGTCCAGGTGAATTGAATAAACTAAATTGGCCGTAGTGTATGAGTTCATGTGTTAATGTGAGAGTGTATGGGTGTTTCCCAGTACTGGGTTGTGGCTGCAAGGGCTGGAAGAAACATATACTGGAATTGTTGGCACTTCATTCCACTGTTGTGACCCCCAATAAACAAGGGACTAAGCCAAAAGAAAAATTAATGAATGAATAAATCTCACTGACCAAAACCCATATCTTCACTTTCCTCCAGTGATTGTGGTGCTGTTCTCGGCTCTGAAG[A/T]AACAGAGGAGAAAGGAACCCCTTATCATCTCGAAGGAGGACGTCCGGGACAATGTGGTCAGCTACAACGATGAGGGCGGTGGCGAGGAAGACACGCAGGCCTTCGACATCGGCACACTGCGCCACCCGGAGGTCATCGAAAGCAACAAACTGCGGCGCGACATCATTCCAGAGATGCTGTTTCCCTACCATAGACCTTCACCCATGAAGGAGTGCGCAGACGTCAGGGACTTCATTATCAGCAGACTGCAAGAAAACGACACAGACCCTTTCGCCCCGCCTTATGATTCGCTCGCAACTTACGCTTATGAGGGAAACGGATCAATCGCTGAGTCACTGAGCTCTCTGGAGTCATCTCTCACTGAGGGAGACCATGAATATGATTACCTTTCTAACTGGGGCCCGCAGTTTAAGAAGCTCGCCGACATGTACATTGGAAAGGATACAGGAATCGCCAACTAGACTGACGGGTTGGTGACATTCGTATTCTCTGTAAGTACG
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461