ZMP
cxcl12b
Ensembl ID:
ZFIN ID:
Description:
chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:RefSeq peptide;Acc:NP_93
Human Orthologue:
CXCL12
Human Description:
chemokine (C-X-C motif) ligand 12 [Source:HGNC Symbol;Acc:10672]
Mouse Orthologue:
Cxcl12
Mouse Description:
chemokine (C-X-C motif) ligand 12 Gene [Source:MGI Symbol;Acc:MGI:103556]
Alleles
There are 5 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa1516 | Nonsense | Available for shipment | Available now |
sa14394 | Nonsense | Available for shipment | Available now |
sa37534 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa24194 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa1516
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000077411 | Nonsense | 4 | 97 | 1 | 4 |
Genomic Location (Zv9):
Chromosome 22 (position 27567533)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 22 | 27082978 |
GRCz11 | 22 | 26945430 |
KASP Assay ID:
554-1440.1 (used for ordering genotyping assays)
KASP Sequence:
CTCGCTGTGATCAACAGAACACACACACACTCGCTCTTGGCATGGATAGC[A/T]AAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTGGAGCCCAGAG
Long Flanking Sequence:
TCAAAAAATGACTTTTGCTGCTTGTTCAAACTATGTATTTAATGTAACTGATTTGATTTGATTTAATTCCTTCATGTTGTCCCAGCACAAATTGATTAAGTTTTTACAAATGTAAGTAGATTGAACACAAAACAATTATGTTGTCTCCAATTAAATGTAAGAATTGTGTCGTTTCAACTCATTTTAAATATGTAGTTTAAACAAGCTGCAAAAGTAATTTTTTAGATTAGATTAACTAATGATAACAAAAGAGAATCTGATATGTGGCTGATAAACTGAGAGTCAGGAAATACAGCGAGTTCCTCCTGAGCGCTCTGAGGAGTTTCTTCAGGTTTGAGGGGGATCTGCATCTCCGCCTCCTCCTGCACTCCTCCTCCTCCTGCTTCTGTCCCGCCGGCCCTCAGTCTTTACACTCCACACAAACTGAGACGCCACACTGAGCTCTGGACACTCGCTGTGATCAACAGAACACACACACACTCGCTCTTGGCATGGATAGC[A/T]AAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTGGAGCCCAGAGACTGACGGTAGGACAATTTTGATTACATCTGCAACGGTTGAGAATATAAGTGATACATTTTTTGAGATGCTGTGTTGATGTTTGTTTAGTAGAGCAACTTTTTGATGGATATTAGTGTGTGATTTGGGGTTACTGAATGTGAAAGGATTTTGTTAAAAATGAAAAGAAAACCTTAAACTTTTACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTTTTTTTGCCAAATTAATATCTCTCTTACATTTCATTTAAAAAAATTAAATGATAACAAAACTAACAAAAAGCAACACTTACTAAACTAACTGACTAACTAACAACTAAAATAAAATAAAGAAAAAAAAAAGAAAAAAAATAATTCTGGTATTATTCTAGACATCATGTCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa14394
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000077411 | Nonsense | 17 | 97 | 1 | 4 |
Genomic Location (Zv9):
Chromosome 22 (position 27567492)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 22 | 27082937 |
GRCz11 | 22 | 26945389 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGGATAGCWAAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTG[G/A]AGCCCAGAGACTGACGGTAGGACAAYTTTGATTAYATCTGCAAYGGTTGA
Long Flanking Sequence:
ATGTAACTGATTTGATTTGATTTAATTCCTTCATGTTGTCCCAGCACAAATTGATTAAGTTTTTACAAATGTAAGTAGATTGAACACAAAACAATTATGTTGTCTCCAATTAAATGTAAGAATTGTGTCGTTTCAACTCATTTTAAATATGTAGTTTAAACAAGCTGCAAAAGTAATTTTTTAGATTAGATTAACTAATGATAACAAAAGAGAATCTGATATGTGGCTGATAAACTGAGAGTCAGGAAATACAGCGAGTTCCTCCTGAGCGCTCTGAGGAGTTTCTTCAGGTTTGAGGGGGATCTGCATCTCCGCCTCCTCCTGCACTCCTCCTCCTCCTGCTTCTGTCCCGCCGGCCCTCAGTCTTTACACTCCACACAAACTGAGACGCCACACTGAGCTCTGGACACTCGCTGTGATCAACAGAACACACACACACTCGCTCTTGGCATGGATAGCAAAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTG[G/A]AGCCCAGAGACTGACGGTAGGACAATTTTGATTACATCTGCAACGGTTGAGAATATAAGTGATACATTTTTTGAGATGCTGTGTTGATGTTTGTTTAGTAGAGCAACTTTTTGATGGATATTAGTGTGTGATTTGGGGTTACTGAATGTGAAAGGATTTTGTTAAAAATGAAAAGAAAACCTTAAACTTTTACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTTTTTTTGCCAAATTAATATCTCTCTTACATTTCATTTAAAAAAATTAAATGATAACAAAACTAACAAAAAGCAACACTTACTAAACTAACTGACTAACTAACAACTAAAATAAAATAAAGAAAAAAAAAAGAAAAAAAATAATTCTGGTATTATTCTAGACATCATGTCTGCTAAAATGAAACTTTACTTTGAAAAACAAATTTATTGTAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37534
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000077411 | Essential Splice Site | 62 | 97 | 3 | 4 |
Genomic Location (Zv9):
Chromosome 22 (position 27558540)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 22 | 27073985 |
GRCz11 | 22 | 26936437 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTCTGCTTTCGTCTGAAACAAATCCCTTCTTTTCTCTCTCTCATTACCA[G/A]TGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCAAAGACCAAAT
Long Flanking Sequence:
TCTCAAATGGTTTGAGTTGCCTTAACTTATTGGGTTTTACAGAACTCACTTGGTTTGAGTTCTCTTCATTTATTGAGTTTTTCTGTGCTCAAATTGCTTCGTTTACTCATTTACGTTCACAGTACTCATTAGGATTAGTTTTTACTTAAATGGTTTGTTGCAATCGGTTTCCTTAAATGGTTTGAGTTACCTCAACTTTTTGAGTTTAACAGTGTACCACTAGTCAATCTATATACACATATACAGCAGGAATCTTTCGGACCCTGGAAAATGGCAAACCTCCAGACAGCACAACACTGTCCTTACGAAAGGGCTTTAATTGAGTGCTGTTATCAGATGGAGGGCGGTACAGAGTAGAATAGAGCGACTGAAATGTGGTCCATGACGACCAGCTGATATGATCTGATAAAACACACTGTAGAGGCGCTCAGGGAGGAAGGTTCAGCCTCCATTCTGCTTTCGTCTGAAACAAATCCCTTCTTTTCTCTCTCTCATTACCA[G/A]TGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCAAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCCTTAACAAGTAAGGAGAAACTTTTATTCCGGGGTTTCATGAGAATCACCAGTCCTTAAAACAATACTTAAAACGTAAACTAATTCATGATGGACAATCATTTTTAAAAATTATAAACACTGTAAAAAATTATAATAACAAAAAGTCACGACAACAAATATTTTCTGTTGATTGAACTTATTTTAATAATTTAATCAGGTTTGAACTCTATTTTGTTAGCTTAACATTTTTAGTCAGTTTGACTGATGTAAGTTGGGACGACTAGAATATTTATTTCTGATTCAACTAAAACAATTAAAGCAGCAACAATTTTTACAGCGTAAGAAAGTGTATATTTCTCATAATCTCAAGTAATTTAGATTAAAATGCAACACTAATGCATCCACTAAAAATCCACTAATGCATATGTAAAATGTTTTGTTACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa24194
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000077411 | Essential Splice Site | 90 | 97 | 3 | 4 |
Genomic Location (Zv9):
Chromosome 22 (position 27558454)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 22 | 27073899 |
GRCz11 | 22 | 26936351 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACCCAAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCCTTAACAAG[T/C]AAGGAGAAACTTTTATTCCGGGGTTTCATGAGAATCACCAGTCCTTAAAA
Long Flanking Sequence:
GCTCAAATTGCTTCGTTTACTCATTTACGTTCACAGTACTCATTAGGATTAGTTTTTACTTAAATGGTTTGTTGCAATCGGTTTCCTTAAATGGTTTGAGTTACCTCAACTTTTTGAGTTTAACAGTGTACCACTAGTCAATCTATATACACATATACAGCAGGAATCTTTCGGACCCTGGAAAATGGCAAACCTCCAGACAGCACAACACTGTCCTTACGAAAGGGCTTTAATTGAGTGCTGTTATCAGATGGAGGGCGGTACAGAGTAGAATAGAGCGACTGAAATGTGGTCCATGACGACCAGCTGATATGATCTGATAAAACACACTGTAGAGGCGCTCAGGGAGGAAGGTTCAGCCTCCATTCTGCTTTCGTCTGAAACAAATCCCTTCTTTTCTCTCTCTCATTACCAGTGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCAAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCCTTAACAAG[T/C]AAGGAGAAACTTTTATTCCGGGGTTTCATGAGAATCACCAGTCCTTAAAACAATACTTAAAACGTAAACTAATTCATGATGGACAATCATTTTTAAAAATTATAAACACTGTAAAAAATTATAATAACAAAAAGTCACGACAACAAATATTTTCTGTTGATTGAACTTATTTTAATAATTTAATCAGGTTTGAACTCTATTTTGTTAGCTTAACATTTTTAGTCAGTTTGACTGATGTAAGTTGGGACGACTAGAATATTTATTTCTGATTCAACTAAAACAATTAAAGCAGCAACAATTTTTACAGCGTAAGAAAGTGTATATTTCTCATAATCTCAAGTAATTTAGATTAAAATGCAACACTAATGCATCCACTAAAAATCCACTAATGCATATGTAAAATGTTTTGTTACATTTCAAACTAATGCAAAATTCATTTATTAAAGCATGTCTATGTTTATATATGTTTTTAGTACACTGTAAAAAAGAGAAAATCACTA
Associated Phenotype:
Not determined