Busch Lab

ZMP

cxcl12b

Ensembl ID:
ENSDARG00000055100
ZFIN ID:
ZDB-GENE-030721-1
Description:
chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:RefSeq peptide;Acc:NP_93
Human Orthologue:
CXCL12
Human Description:
chemokine (C-X-C motif) ligand 12 [Source:HGNC Symbol;Acc:10672]
Mouse Orthologue:
Cxcl12
Mouse Description:
chemokine (C-X-C motif) ligand 12 Gene [Source:MGI Symbol;Acc:MGI:103556]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa1516 Nonsense Available for shipment Available now
sa14394 Nonsense Available for shipment Available now
sa37534 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa24194 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa1516
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077411 Nonsense 4 97 1 4
Genomic Location (Zv9):
Chromosome 22 (position 27567533)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 27082978
GRCz11 22 26945430
KASP Assay ID:
554-1440.1 (used for ordering genotyping assays)
KASP Sequence:
CTCGCTGTGATCAACAGAACACACACACACTCGCTCTTGGCATGGATAGC[A/T]AAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTGGAGCCCAGAG
Long Flanking Sequence:
TCAAAAAATGACTTTTGCTGCTTGTTCAAACTATGTATTTAATGTAACTGATTTGATTTGATTTAATTCCTTCATGTTGTCCCAGCACAAATTGATTAAGTTTTTACAAATGTAAGTAGATTGAACACAAAACAATTATGTTGTCTCCAATTAAATGTAAGAATTGTGTCGTTTCAACTCATTTTAAATATGTAGTTTAAACAAGCTGCAAAAGTAATTTTTTAGATTAGATTAACTAATGATAACAAAAGAGAATCTGATATGTGGCTGATAAACTGAGAGTCAGGAAATACAGCGAGTTCCTCCTGAGCGCTCTGAGGAGTTTCTTCAGGTTTGAGGGGGATCTGCATCTCCGCCTCCTCCTGCACTCCTCCTCCTCCTGCTTCTGTCCCGCCGGCCCTCAGTCTTTACACTCCACACAAACTGAGACGCCACACTGAGCTCTGGACACTCGCTGTGATCAACAGAACACACACACACTCGCTCTTGGCATGGATAGC[A/T]AAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTGGAGCCCAGAGACTGACGGTAGGACAATTTTGATTACATCTGCAACGGTTGAGAATATAAGTGATACATTTTTTGAGATGCTGTGTTGATGTTTGTTTAGTAGAGCAACTTTTTGATGGATATTAGTGTGTGATTTGGGGTTACTGAATGTGAAAGGATTTTGTTAAAAATGAAAAGAAAACCTTAAACTTTTACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTTTTTTTGCCAAATTAATATCTCTCTTACATTTCATTTAAAAAAATTAAATGATAACAAAACTAACAAAAAGCAACACTTACTAAACTAACTGACTAACTAACAACTAAAATAAAATAAAGAAAAAAAAAAGAAAAAAAATAATTCTGGTATTATTCTAGACATCATGTCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14394
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077411 Nonsense 17 97 1 4
Genomic Location (Zv9):
Chromosome 22 (position 27567492)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 27082937
GRCz11 22 26945389
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGGATAGCWAAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTG[G/A]AGCCCAGAGACTGACGGTAGGACAAYTTTGATTAYATCTGCAAYGGTTGA
Long Flanking Sequence:
ATGTAACTGATTTGATTTGATTTAATTCCTTCATGTTGTCCCAGCACAAATTGATTAAGTTTTTACAAATGTAAGTAGATTGAACACAAAACAATTATGTTGTCTCCAATTAAATGTAAGAATTGTGTCGTTTCAACTCATTTTAAATATGTAGTTTAAACAAGCTGCAAAAGTAATTTTTTAGATTAGATTAACTAATGATAACAAAAGAGAATCTGATATGTGGCTGATAAACTGAGAGTCAGGAAATACAGCGAGTTCCTCCTGAGCGCTCTGAGGAGTTTCTTCAGGTTTGAGGGGGATCTGCATCTCCGCCTCCTCCTGCACTCCTCCTCCTCCTGCTTCTGTCCCGCCGGCCCTCAGTCTTTACACTCCACACAAACTGAGACGCCACACTGAGCTCTGGACACTCGCTGTGATCAACAGAACACACACACACTCGCTCTTGGCATGGATAGCAAAGTAGTAGCGCTGGTGGCGCTGCTGATGCTCGCCTTCTG[G/A]AGCCCAGAGACTGACGGTAGGACAATTTTGATTACATCTGCAACGGTTGAGAATATAAGTGATACATTTTTTGAGATGCTGTGTTGATGTTTGTTTAGTAGAGCAACTTTTTGATGGATATTAGTGTGTGATTTGGGGTTACTGAATGTGAAAGGATTTTGTTAAAAATGAAAAGAAAACCTTAAACTTTTACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTTTTTTTGCCAAATTAATATCTCTCTTACATTTCATTTAAAAAAATTAAATGATAACAAAACTAACAAAAAGCAACACTTACTAAACTAACTGACTAACTAACAACTAAAATAAAATAAAGAAAAAAAAAAGAAAAAAAATAATTCTGGTATTATTCTAGACATCATGTCTGCTAAAATGAAACTTTACTTTGAAAAACAAATTTATTGTAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37534
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077411 Essential Splice Site 62 97 3 4
Genomic Location (Zv9):
Chromosome 22 (position 27558540)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 27073985
GRCz11 22 26936437
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTCTGCTTTCGTCTGAAACAAATCCCTTCTTTTCTCTCTCTCATTACCA[G/A]TGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCAAAGACCAAAT
Long Flanking Sequence:
TCTCAAATGGTTTGAGTTGCCTTAACTTATTGGGTTTTACAGAACTCACTTGGTTTGAGTTCTCTTCATTTATTGAGTTTTTCTGTGCTCAAATTGCTTCGTTTACTCATTTACGTTCACAGTACTCATTAGGATTAGTTTTTACTTAAATGGTTTGTTGCAATCGGTTTCCTTAAATGGTTTGAGTTACCTCAACTTTTTGAGTTTAACAGTGTACCACTAGTCAATCTATATACACATATACAGCAGGAATCTTTCGGACCCTGGAAAATGGCAAACCTCCAGACAGCACAACACTGTCCTTACGAAAGGGCTTTAATTGAGTGCTGTTATCAGATGGAGGGCGGTACAGAGTAGAATAGAGCGACTGAAATGTGGTCCATGACGACCAGCTGATATGATCTGATAAAACACACTGTAGAGGCGCTCAGGGAGGAAGGTTCAGCCTCCATTCTGCTTTCGTCTGAAACAAATCCCTTCTTTTCTCTCTCTCATTACCA[G/A]TGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCAAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCCTTAACAAGTAAGGAGAAACTTTTATTCCGGGGTTTCATGAGAATCACCAGTCCTTAAAACAATACTTAAAACGTAAACTAATTCATGATGGACAATCATTTTTAAAAATTATAAACACTGTAAAAAATTATAATAACAAAAAGTCACGACAACAAATATTTTCTGTTGATTGAACTTATTTTAATAATTTAATCAGGTTTGAACTCTATTTTGTTAGCTTAACATTTTTAGTCAGTTTGACTGATGTAAGTTGGGACGACTAGAATATTTATTTCTGATTCAACTAAAACAATTAAAGCAGCAACAATTTTTACAGCGTAAGAAAGTGTATATTTCTCATAATCTCAAGTAATTTAGATTAAAATGCAACACTAATGCATCCACTAAAAATCCACTAATGCATATGTAAAATGTTTTGTTACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24194
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077411 Essential Splice Site 90 97 3 4
Genomic Location (Zv9):
Chromosome 22 (position 27558454)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 27073899
GRCz11 22 26936351
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACCCAAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCCTTAACAAG[T/C]AAGGAGAAACTTTTATTCCGGGGTTTCATGAGAATCACCAGTCCTTAAAA
Long Flanking Sequence:
GCTCAAATTGCTTCGTTTACTCATTTACGTTCACAGTACTCATTAGGATTAGTTTTTACTTAAATGGTTTGTTGCAATCGGTTTCCTTAAATGGTTTGAGTTACCTCAACTTTTTGAGTTTAACAGTGTACCACTAGTCAATCTATATACACATATACAGCAGGAATCTTTCGGACCCTGGAAAATGGCAAACCTCCAGACAGCACAACACTGTCCTTACGAAAGGGCTTTAATTGAGTGCTGTTATCAGATGGAGGGCGGTACAGAGTAGAATAGAGCGACTGAAATGTGGTCCATGACGACCAGCTGATATGATCTGATAAAACACACTGTAGAGGCGCTCAGGGAGGAAGGTTCAGCCTCCATTCTGCTTTCGTCTGAAACAAATCCCTTCTTTTCTCTCTCTCATTACCAGTGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCAAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCCTTAACAAG[T/C]AAGGAGAAACTTTTATTCCGGGGTTTCATGAGAATCACCAGTCCTTAAAACAATACTTAAAACGTAAACTAATTCATGATGGACAATCATTTTTAAAAATTATAAACACTGTAAAAAATTATAATAACAAAAAGTCACGACAACAAATATTTTCTGTTGATTGAACTTATTTTAATAATTTAATCAGGTTTGAACTCTATTTTGTTAGCTTAACATTTTTAGTCAGTTTGACTGATGTAAGTTGGGACGACTAGAATATTTATTTCTGATTCAACTAAAACAATTAAAGCAGCAACAATTTTTACAGCGTAAGAAAGTGTATATTTCTCATAATCTCAAGTAATTTAGATTAAAATGCAACACTAATGCATCCACTAAAAATCCACTAATGCATATGTAAAATGTTTTGTTACATTTCAAACTAATGCAAAATTCATTTATTAAAGCATGTCTATGTTTATATATGTTTTTAGTACACTGTAAAAAAGAGAAAATCACTA
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa29811
Status:
Less stringent filtering
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000077411 Essential Splice Site 90 97 4 4
Genomic Location (Zv9):
Chromosome 22 (position 27554179)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 27069624
GRCz11 22 26932076
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAGTAACTGATAACGTAAAATTCTGATCTGAATTTTCCTTTTCTTTTTTC[A/T]GAATAAAGAAGAAACGCTCAGAGTAAACAGACGAGGATGTGCGAGGAGGA
Long Flanking Sequence:
TACCTTAGACAAAATAATTACTGGTGTAATTACTGAGACAAAACAAAGGCACTGATATATTTAAGATCAGTGCAATTGTCTGAAAAAGACTCATTTATTTTCCTTCGGCTTAGTCTCTCATTTATCAGAGGTTGCCAAAGTGGAAAGAACAGCCAACTATTCTGGCATATGTTTTACACAACCCAGTACTGGGAAACACCCATACACTCTCACATTCGCACACACACACACATAAACACATACAATATGGCCAATTTTGTTAATGCAATTCACTTATAGTAAATATCTTTGGACTGTGGGGAAACCCATGCCAACACAAAGAGTACATGCAAACTCCACACAGAAATGCCAACTGGCCCAGTCGGGACTCGAACCAGATACTTTCTAGCTGTGAGTCAACAGTGCTAACCACTGAACCACCATGCTATCGATCTAAAAAACACATGAAAAAAGTAACTGATAACGTAAAATTCTGATCTGAATTTTCCTTTTCTTTTTTC[A/T]GAATAAAGAAGAAACGCTCAGAGTAAACAGACGAGGATGTGCGAGGAGGACAGCGGAGAATCTCTAAAGTCCAAAGAGTCCCGTGTCCTGGAGTCTCACACTCGCTGACCACTCTTCCTCTTTCTGGACTGCTTGCACAAACAGCACTTCTTCACCTGAACCTGCCTCTGGAGCATCAGCTCACCACACACACACACACACAGATACACCGAACGCCTTCATCGCCGCTGCGCACTGCTAATATTTACCCTCGCACGAGTCTGTGTGACTGAATGTGAAGGCCAGGAAGATATTTACTTGGTTAAAGGACAGCAAAAATGAGAGTTAGTGGATTTGTGTGTTAGCTGTGAGGAATGTTTAGTTATAGGATAGTTTGTGGTTAGTAAGGGACGTTTGCAAGTGAAAACAAAAAAGTAAGCAGAAAGGTAAAACTGCCCCTGTTCAAGCTCAATTTTGCATCGTTTTGCTGCTCTAGGCTTAAGTATAAGTGCTTAAAGCTC
Associated Phenotype:
Not determined