ZMP
trub1
Ensembl ID:
ZFIN ID:
Description:
probable tRNA pseudouridine synthase 1 [Source:RefSeq peptide;Acc:NP_001122159]
Human Orthologue:
TRUB1
Human Description:
TruB pseudouridine (psi) synthase homolog 1 (E. coli) [Source:HGNC Symbol;Acc:16060]
Mouse Orthologue:
Trub1
Mouse Description:
TruB pseudouridine (psi) synthase homolog 1 (E. coli) Gene [Source:MGI Symbol;Acc:MGI:1919383]
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa27977 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa27977
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000075889 | Essential Splice Site | 96 | 290 | 3 | 8 |
Genomic Location (Zv9):
Chromosome 12 (position 31615105)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 12 | 29924448 |
| GRCz11 | 12 | 30039350 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAATCGGTGAAGGAACAAAAATGCTCACAACAATGCTTGCAGGTTCAAAG[G/A]TAAGTATTTTCAGGGTCACATTAGGTTTATGTTATTCTGCAGTTGTCATT
Long Flanking Sequence:
TGCCAGTTATATAGTGTTTGTCAGATTAACGTCAATATCTAAGGAAATTACACAAGCCTTATACTTTAATAAGTGTTCTTTTTCAAATACCTCATTTAAGGTTTTCATACTGCACTTCTGAATGTATGAAACTCATGAAATATGCTTTAAAAACGACTTTTTCTGTTTTTAAAACTCCTGTTTGGATAATCTTAAGTAGAACAAAGCAATAGGACTAATACATTTAGGCAATTGTAAATTCTCTTATTTTGATCTCCACTGTAGAAGAGTTTAATAAAATATGCAGTTTAAATGTTTATTTTGTATGTTTTCTAAAGGAAGACATACAAAAGTTTCATGTTATGAAAAATAAAATAGCTCAAAATTGCAAAACTTAACCTAAACAGATATAATTCAAACAATTATCAATTAACTATAATCTCATAAAATCTTAATGTTTTGCAGTGGTTGGAATCGGTGAAGGAACAAAAATGCTCACAACAATGCTTGCAGGTTCAAAG[G/A]TAAGTATTTTCAGGGTCACATTAGGTTTATGTTATTCTGCAGTTGTCATTTTCATGATTTATGGTCATTTTCGTAGAAATACACAGCTTTTGGAGAGCTTGGCAAAGCAACTGATACTCTTGACGTCACAGGAAATGTTGTTGAAGAGAAGAGTTACGGTGAGAATTGTAATCTTGTGGCTGCTCTTGTGATGAAGGAATGAATGTCTTGCAGATGTCAATGTCTTAACATTTAGTGCTTGTACCCCCTCCCAGACCACATCACAAAAGAGGCTTTTGAGGAGAAGATGAAGCAGTTTACAGGCGAAATTATGCAGGTTCCACCCCTGTATGTCAATTTATTCTGCTTGATATATAACACTATTTAGAGCTCTTTGAAAGAGTTATGCTTTTTAACGTCACAGACATTCTATTATTTGTATTTCAAGATATTCAGCACTGAAGAAAGATGGCAAGCGTATGTCTGTACTGCTCAAGCAAGGCCAAGAGGTCGAGGCTAAA
Associated Phenotype:
Not determined