ZMP
shmt1
Ensembl ID:
ZFIN ID:
Description:
serine hydroxymethyltransferase, cytosolic [Source:RefSeq peptide;Acc:NP_957340]
Human Orthologue:
SHMT1
Human Description:
serine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:10850]
Mouse Orthologue:
Shmt1
Mouse Description:
serine hydroxymethyltransferase 1 (soluble) Gene [Source:MGI Symbol;Acc:MGI:98299]
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa26132 | Splice Site, Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa26132
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Splice Site, Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000074737 | Splice Site | None | 481 | None | 12 |
| ENSDART00000124883 | Nonsense | 20 | 504 | 3 | 14 |
| ENSDART00000132225 | Splice Site | None | 236 | None | 7 |
| ENSDART00000141578 | None | None | 248 | 1 | 6 |
Genomic Location (Zv9):
Chromosome 3 (position 40269844)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 40133204 |
| GRCz11 | 3 | 40275062 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTACACTATGTTTTGCATTTGGCAGTCTTGTATTGATTAATAATGTTTA[T/A]TCCAGTTCATCAACCATGTCCCAGCTCAACGGTCATACTGAGAAAACATG
Long Flanking Sequence:
ATAACCTGTAAAAGGCGTGCTGTGCTCTGGCAGCTGCAGTCAGTTGCATCATTTGATTGACAGCTGAGCAGTTTTGTGTGTGTGTGTAAATATATCAATTGTCTTTTAATATGATTCGTGACATTTTGTAGTAATATTTGCTTTGGTGATAATTTTATTGCAATGATGTATTCGCACGTGATTAACTGCTTTATTTTTCATTGTTCATGTTAACTGATGTAGTCGTTATTGTAAAGTATTTTAATAATGACCATTTATCAGTTGTTTTATTATACTAGTTTGAGGTTATTTTTTTTCCTTTTTTTGCAAGCGTACCTTTATTTTACACGCACACATTTCTTAATATCTATATATTTTTTTCAATTGAAGACCATGACTATTAGTAGTTTTATTTGATGCATTCTAAATATATGATTGCTACTCGCAATTGCTACTACTACTATTACTGTGTTTACACTATGTTTTGCATTTGGCAGTCTTGTATTGATTAATAATGTTTA[T/A]TCCAGTTCATCAACCATGTCCCAGCTCAACGGTCATACTGAGAAAACATGGGAATCTCATAACAAGATGATGTTGGAGCCTCTGAGCACCAATGATCCTGAGGTAAGACTGATTGTTACACCTGGCTCAGGGATGTAACATAGTAAGGGAGACGACAAGGAGAAGTATAATCAAAAAGAAGATTTATTTAACTCAATTTAAATTATATAATCAAAATATCAGTGTGAAATGCAAATGAATGGATGCGGTAAATGTTGTCAGTGATAGTGTATGGATGCGAAACAAAGCATAATGCCCAAATTGGAGCGCAGCTCTGGCCAACTGCCAAGTGAATGGACAGCGCCCGACAAGCTCTCTGACCAGCATCAGGTGCACTGAAGGCACGCCCCCAATCTAGAATCAAATCAAAACCATAAAACAACGCAGTCCTAACACTGATCATATCATGGACTGATTTAAAGTGACTGTCCATCCAAACATGAAAATTCCTCACAATGTAC
Associated Phenotype:
Not determined