ZMP
si:dkey-220f10.6
Ensembl ID:
ZFIN ID:
Description:
sorting nexin 11 [Source:RefSeq peptide;Acc:NP_001037781]
Human Orthologue:
SNX11
Human Description:
sorting nexin 11 [Source:HGNC Symbol;Acc:14975]
Mouse Orthologue:
Snx11
Mouse Description:
sorting nexin 11 Gene [Source:MGI Symbol;Acc:MGI:1921729]
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa6250 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa6250
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000080870 | Essential Splice Site | 71 | 328 | 4 | 7 |
| ENSDART00000105361 | Essential Splice Site | 71 | 313 | 4 | 8 |
| ENSDART00000105362 | Essential Splice Site | 71 | 506 | 4 | 7 |
Genomic Location (Zv9):
Chromosome 12 (position 21966097)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 12 | 20491678 |
| GRCz11 | 12 | 20613552 |
KASP Assay ID:
554-4755.1 (used for ordering genotyping assays)
KASP Sequence:
GYGAGTTTGCTTGGCTGAAGAAAAAACTGCAGAAGAATGCTGGTCTGGTG[T/C]AAGTTCCTGTTTATGCTTCCAATTGAGCATGGCTACATGCACAACAGTAC
Long Flanking Sequence:
TCTTATGTGTTCAAACAACAGACAGGGTAAAGAAAGTGAGTAAATTATGAATTTTTGAGTACACGATCCCTTTATGAAATCAATATTTCAAATTAAAATATCTCAAAATGTTTGTTATTCTAGTGGCCATTAAATGAAAAAAGCTGTAAATGACAATATTTGAATGATGGACATCAGCATGACTTTAGTTAGTTTAAAGGTTTACAACAATAAAACTTTAAGCGATAAACTGACCATTTTAAAATGGGCGAATATGCAAGACGTGATAGATGTACAGGCTTTTATGATATAAATGTCTTTATTATAGAAGTATAAACCTTCAATTTTTATTTAGCAGTTCATTTTGATAACTACGTCAGTGATCTGAATTTGGTTTCATACTTGCTTTCTGCCTTCAGACAAACAGCAAAGCATTCACTGCCAAAACATCCTGTGTGAGGCGGCGATACAGTGAGTTTGCTTGGCTGAAGAAAAAACTGCAGAAGAATGCTGGTCTGGTG[T/C]AAGTTCCTGTTTATGCTTCCAATTGAGCATGGCTACATGCACAACAGTACAATGAGAACGATCACAAATCTGGTTAATGAAATAACCTGTTTTACTGGTTTGCAGTCTGTGCAGATATATTAGCCGACATGTGAATAAGATACATTTAAAAGACTTTATTTAAAATTCGATTATTTCCTGGTGGTGACATCAAAACATATCTTCTGCATATGGTATTTCATTTGTTATGCATGTTGGATCATTAAAATATAACTAAAATTACTATGACTTTTACATTTGCATTAGATGAGAAGATATTCATATAATTTCTTTGGTCAAGAAAGTGATTCATTTTCTTTGTGGTTGAGTGCATGTAAATCCAAAGTGTTCTTCATAACAGTAAATGGGAGTAAATTCCCCACAGCATTACCAGTTTTGCTCTGCAGAGATTCACAAATAATGTCAGTTTTAAGTGTTTATAAGCTGTGTGCAGTCAGTGTAATAGACTAGCTGTAATAGAC
Associated Phenotype:
Not determined