Busch Lab

ZMP

pdcd11

Ensembl ID:
ENSDARG00000052480
ZFIN ID:
ZDB-GENE-030131-4076
Description:
protein RRP5 homolog [Source:RefSeq peptide;Acc:NP_001082837]
Human Orthologue:
PDCD11
Human Description:
programmed cell death 11 [Source:HGNC Symbol;Acc:13408]
Mouse Orthologue:
Pdcd11
Mouse Description:
programmed cell death 11 Gene [Source:MGI Symbol;Acc:MGI:1341788]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa10691 Nonsense Available for shipment Available now
sa9850 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa10691
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074342 Nonsense 416 1816 9 35
ENSDART00000108733 Nonsense 413 931 10 31
ENSDART00000124833 Nonsense 416 1816 10 36

The following transcripts of ENSDARG00000052480 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 1 (position 49953986)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 48803167
GRCz11 1 49447587
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AMAAACCACCTGATGTCCCAGWCTCAGCATATTCTGAGGATCATAAATTA[C/A]AGTCCAATAGAGCAGATCTACCARGCCACGCTCCGCTGGTTGGTTTTGAG
Long Flanking Sequence:
TCTATCTCTCAGGAACACTATATTGTTTGACCGCCTGCTCCCGTTCAAATTACAAGATTTGCCAATCACCACCATGTTTTATTCAGAAATTTATTTCCGTGCCGCAAGAAATCTGTTTGGGTCCTCATGATTGAAGTCCAATGCAGACCTCAAGATTGCAACTACATTTAATTCAAAGTGATTCAAACTTGATTCAAGCACCATCTGCTGGTCAAAAAGAGAAATGCAACAATACATGTATGGGTCAACGACTAAAAGTGGCTTAACTGTGTTTTTTATACTGTTGCCGCTATCCTTTAAACCACTGCATCTTACGCATTCGTTGGATCACTCATTCTATTATATATTTTAAAGTGATTGTAATATGAAACATGAAAACTGGTCATTTACTCATCCTTTACTTTTCTCATGCAGAGAAACCTGCTGAAGGAGCCCAAAGAAGAGCTCGACACAAACCACCTGATGTCCCAGACTCAGCATATTCTGAGGATCATAAATTA[C/A]AGTCCAATAGAGCAGATCTACCAAGCCACGCTCCGCTGGTTGGTTTTGAGTAGAGCTGGGCAGAAAAATAGTTTGAATCAATTCTGAAAATTCCAAAATGCATCACTATTCTGAATTCTGAGCTTGATTTATTTATTTATTTTTTTACAGCAGATGGAGTTTTATGCTCGTTGTTAACAGAGGATGACGTTCTAAATTGGTTTTGATCAGCATATGGCACTCTAGGATAGTTTTGAACAGCAGATGGCGCTCTAGGATAGTTTTGAACAGCAGATGGCGCTCTAGGATAGTTTTGAACAGCAGATGGCGCTCTAGGATAGTTTTGAACAGCAGATGGCGCTCTAGGATAGTTTTAACAGTAGATGGCGCTCTAGGCTAGTTTTTAACACCGAAATCCTCTCAAGGAAGAGGTGTTGTGTGTTCGGCTGAGTCATGCAAGTCAGCTTTTATGTCATGAAATGACTAAACACGGCTCGCTATGAACATTTTTGTAATTCACT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9850
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074342 Essential Splice Site 1513 1816 30 35
ENSDART00000108733 None None 931 None 31
ENSDART00000124833 Essential Splice Site 1513 1816 31 36
ENSDART00000074342 Essential Splice Site 1513 1816 30 35
ENSDART00000108733 None None 931 None 31
ENSDART00000124833 Essential Splice Site 1513 1816 31 36

The following transcripts of ENSDARG00000052480 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 1 (position 49981447)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 48830628
GRCz11 1 49475048
KASP Assay ID:
2259-1063.1 (used for ordering genotyping assays)
KASP Sequence:
CAGACGACAACCAGAACTCCAGTGAGGATGAGGAGGAAGTCAAAAGCAAG[G/A]TGAGCTCAHGTGTCAATCAAAAGCTCMATTTCTTCTGTGTAGACTTTAGG
Long Flanking Sequence:
TAATTTATTTACTTTTATATATTATTTATTTTATTGTATTTTTTATCATTTATTTACTTTTTATTATGCATTTATCTTATTGTACTATTGTTTTATTTTATTGTATTGTGTATTTAATTTTTTTTTTTCCAGTAACAGACTCCTGAGAGTTTTGTATAAAAGTGTGCTCACTTAATTTTTCCTTTGCATCATGCTATACATTTGCCGTTTTCAAAACCATGCACATTATTCATGTCTATGCTTACTTGACCTTCACTGAGGATGATTTAAAAGAGGATTGATAACTTATTAATTCTCAGCTTTCCTAATCAAAATACACGATTTCCTCTGATATCTTACATTTTCTAAATGTTTAGGTTAAATGCAAGGAACAGGAACCAAACCGGCTTCAGGTGACATCCAGCTTCCCATGGGAGTCCACACTGGGCTCTTTAACACCTTTTGCTCCAGCAGACGACAACCAGAACTCCAGTGAGGATGAGGAGGAAGTCAAAAGCAAG[G/A]TGAGCTCAAGTGTCAATCAAAAGCTCCATTTCTTCTGTGTAGACTTTAGGATATACCATCAGAAATGTATGTTCTTCATTCCCCTATTAGCCATGATTTGCCAAAACTTTGCATTTACTTGCACATTTGCATTCCCTCAAGAAACAAACATGTTTTTTTTTACCTTTAGGATTCCTGTATATATAAGATTCTAAATATTTATGTTTTGTGTTTTGCACTCTCTACTACACAACAATATTCCAACGAGAGCTTTGCTTATTCTCACTCTTAAAGGGATAGTTTAAAAAAAAACTACTCACCCTCAAGTGGCTCCAAACCTTTGTGAGTTTCCTTTTTCTGTTGAACACTAAAGATATTTTAATGAAAACTGATAACTATTGACTTCCATAGTAAAGAAAAAACATATTATGGGAGTCAGTGATTACAGGATCAAAGAAACTTGAAGAGTAAATAATGAGTAAATGTATATTTTTGGATGAACTGTAACTAAGGTTATGGCC
Associated Phenotype:
Not determined