Busch Lab

ZMP

cntn1b

Ensembl ID:
ENSDARG00000045685
ZFIN ID:
ZDB-GENE-041210-236
Description:
contactin-1 [Source:RefSeq peptide;Acc:NP_001014814]
Human Orthologue:
CNTN1
Human Description:
contactin 1 [Source:HGNC Symbol;Acc:2171]
Mouse Orthologue:
Cntn1
Mouse Description:
contactin 1 Gene [Source:MGI Symbol;Acc:MGI:105980]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa10944 Nonsense Available for shipment Available now
sa40254 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa38430 Nonsense Mutation detected in F1 DNA Not yet available
sa33426 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa30847 Nonsense Mutation detected in F1 DNA Not yet available
sa33427 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa10944
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067166 Nonsense 116 1031 5 24
ENSDART00000133157 Nonsense 116 1039 5 24
Genomic Location (Zv9):
Chromosome 4 (position 12807149)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 13743776
GRCz11 4 13742625
KASP Assay ID:
2259-4687.1 (used for ordering genotyping assays)
KASP Sequence:
GGAAACCTGGTCATTACAAACCCAGAAAAAAACAAGYATGCTGGRAAATA[T/A]GTATGTGTGGCCAAGAACGTGTACGGCACCGTCATGAGCRAAGAGGCCAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa40254
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067166 Essential Splice Site 137 1031 5 24
ENSDART00000133157 Essential Splice Site 137 1039 5 24
Genomic Location (Zv9):
Chromosome 4 (position 12807214)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 13743841
GRCz11 4 13742690
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAACGTGTACGGCACCGTCATGAGCAAAGAGGCCAACGTCAAGTTTGGAT[G/A]TATGTGAGGAATTGGACTTGTTGGGTTTGTGTTAATCATTTTTTCCCCTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa38430
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067166 Nonsense 449 1031 12 24
ENSDART00000133157 Nonsense 457 1039 12 24
Genomic Location (Zv9):
Chromosome 4 (position 12812560)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 13749187
GRCz11 4 13748036
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAAATGGACGTGTGGTCATAGAGTGCAATCCCCGTGCTGCTCCCAAACCC[A/T]GATTCATCTGGAAACGAGGCTCGGAGCTCCTGAGCAACTCCTCAAGGTCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33426
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067166 Essential Splice Site 712 1031 18 24
ENSDART00000133157 Essential Splice Site 720 1039 18 24
Genomic Location (Zv9):
Chromosome 4 (position 12816010)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 13752637
GRCz11 4 13751486
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAACTAATGTTTGCATCCATCATTGTCTCACCCAGACTTTTTCTTGTTTT[A/G]GGGCCAACAGTAGCTCCTTCTGACGTCATTGGACAAGTGGGAATAAGCGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa30847
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067166 Nonsense 887 1031 21 24
ENSDART00000133157 Nonsense 895 1039 21 24
Genomic Location (Zv9):
Chromosome 4 (position 12818193)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 13754820
GRCz11 4 13753669
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAACTGTAAACCAAACCCGTCTGGAAAACATGCGACCTGATTCGCATTA[C/A]CTTATTGAGGTGCGAGCGTTTAATGGAGCAGGACTGGGACCACCAAGCGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33427
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067166 Nonsense 920 1031 22 24
ENSDART00000133157 Nonsense 928 1039 22 24
Genomic Location (Zv9):
Chromosome 4 (position 12818374)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 13755001
GRCz11 4 13753850
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGAGAATACTGTATATGTATGTTGTGCTTTCAGCCCCAAGTCGTCGTTTG[A/T]GAGTTTACAAGTATGTCAGCTTTACACGCAAATGGCTGTATCTGTATTGG
Associated Phenotype:
Not determined