ZMP
zgc:101136
Ensembl ID:
ZFIN ID:
Description:
U6 snRNA-associated Sm-like protein LSm1 [Source:RefSeq peptide;Acc:NP_001003551]
Human Orthologue:
LSM1
Human Description:
LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:20472]
Mouse Orthologue:
Lsm1
Mouse Description:
LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:191445
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa34479 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa34479
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000063392 | Essential Splice Site | 38 | 133 | 2 | 4 |
Genomic Location (Zv9):
Chromosome 8 (position 46927289)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 8 | 44619794 |
| GRCz11 | 8 | 44613700 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCGAGATGGAAGAACGTTAATTGGCATCCTCAGAAGTATAGATCAGTTTG[G/A]TATGTAAAGAGGCCGTTAATTTAGCCTATTTTTATTATTACTTCAAAATA
Long Flanking Sequence:
ACGCGTTTGAAATAGTCCATGGCTTGATACTTTGTGTTTAAAAAACAATTCCCAAATGTCAGCATAATGAATTACATGCCAGGGACCGCGAGCCTCATCGAGGACATCGATAGTAAGTTAATTGCGAAATAAGGAAATGTGTTCGAGTGAATGAACACCGGCGAGACTGTTTTTTTTTGTAATGATGTTTAACTAGGCTGCCTGAGCGTTTGTAAAAGTCATGTTAGTGGTAAACCGACAAGTATAACCTTAACGCTCTGTTCTATTGTTCCGCAAGCTTACCTTTATTTTATGTAGCCTCATCCAGTTATCTAGTTATTTAGTTCGATTAATTTACCTTAATGCAGGTGTTTTAGGTGATCACGTGATGAAATTGACATATCTTCGAGTTAAAAGGTATTCCTGTGATTGACAATGTTTTCATTTCACAGAAAAACACCTTGTACTGCTTCGAGATGGAAGAACGTTAATTGGCATCCTCAGAAGTATAGATCAGTTTG[G/A]TATGTAAAGAGGCCGTTAATTTAGCCTATTTTTATTATTACTTCAAAATATTAAGTGGTGTTCAGGTGGAGGTCTTAAATAAAATTCTGTTCAATGTGTAAAATGTCTGGTTGCTGTTTTTCAGCCCATACCTGTATTCAAAATGTTTTTATTTTGTTTGTTTGTTTTTCCCAATGGGGTCATGTTTGGAATGGTATGAAAAAAAGAGTTGTGAGCTTTTTTATTTTCTTTATTATTAGCAAAACTACAATTATATTTTAACACTTTTTTTTTTCCTTTCACAGCCAATCTAGTTTTGCATCAGACAGTTGAACGTATCCATGTAGGTAAAAAATTTGGTGACATACCTCGAGGGATATTTGTCGTCAGAGGAGAAAATGTTGTCTTGCTTGGAGAAGTAGTAAGTACAGCTTTTCATCATTCTGCAACTTTTTGAGTGATTTGTAAAGCATGTTTCCAATAATAAAAATTATAGCAAGCCATTTTTAGCGTTAATGCCC
Associated Phenotype:
Not determined