ZMP
usf1
Ensembl ID:
ZFIN ID:
Description:
upstream transcription factor 1 [Source:RefSeq peptide;Acc:NP_956590]
Human Orthologue:
USF1
Human Description:
upstream transcription factor 1 [Source:HGNC Symbol;Acc:12593]
Mouse Orthologue:
Usf1
Mouse Description:
upstream transcription factor 1 Gene [Source:MGI Symbol;Acc:MGI:99542]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa8978 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa10575 | Nonsense | Available for shipment | Available now |
| sa22630 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa8978
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019636 | Essential Splice Site | 20 | 309 | 3 | 11 |
| ENSDART00000132373 | Essential Splice Site | 20 | 205 | 3 | 9 |
| ENSDART00000133821 | Essential Splice Site | 20 | 90 | 3 | 5 |
| ENSDART00000138676 | Essential Splice Site | 20 | 248 | 3 | 10 |
| ENSDART00000142070 | Essential Splice Site | 20 | 156 | 3 | 7 |
| ENSDART00000142902 | None | None | 230 | None | 7 |
| ENSDART00000143643 | Essential Splice Site | 20 | 299 | 3 | 11 |
| ENSDART00000143990 | Essential Splice Site | 20 | 213 | 3 | 9 |
| ENSDART00000144901 | Essential Splice Site | 20 | 224 | 3 | 9 |
| ENSDART00000146967 | Essential Splice Site | 20 | 237 | 3 | 9 |
Genomic Location (Zv9):
Chromosome 15 (position 20214934)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 15 | 21317560 |
| GRCz11 | 15 | 21253292 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAACCGAAAAGTTCTGARCCTGATGTCAGTRTTCCAGTCATTGAAGAAGG[T/C]ATTATCAGGTTACTTGTAAAGCAGCATTATGAGTTTTTTAAAATATATTT
Long Flanking Sequence:
AGCTAGCTAGCTACCCATTCAACTGAAATCATTTTGAAATGTATAGCTTATGCATGTATGTTTATTTAGTTAGCCATCGTGTGCCTATAATAAGGTAATTATTAATGTATTTAATATCTGCAACGTAATGCACAACCAGTGTAAGTAACTTAGTGCATACACATTGTTAGGAGTGACTCCTGTTGGACACTTCTGTTAATAACGTTACAACAGTAAATGTTCATTTTTACAAATATGTTGTTATTAAAATTACTCCTCTCTTTCCAGTTCAGATTTTATAAGACAACAAGAAGTGGTAACACAAATTTTACTTGTTACATACTGACAGTGGAGATGAAAGGGTTTGTATGATATACTATTATCTTCATAAATGATAGGAGTATTTGTTACACTATAGCCATTGTAATGCAACTATTCTATCATAATAATCTAAACTTCTGTATTTTCAGACAACCGAAAAGTTCTGAACCTGATGTCAGTGTTCCAGTCATTGAAGAAGG[T/C]ATTATCAGGTTACTTGTAAAGCAGCATTATGAGTTTTTTAAAATATATTTGGAGAATTGATGTGTCTTATTGTCGCAGGGGCAGTTGCTACTGCAGAAGACCCATCAGCAATCACAACTATTCAATCTGCTTCTACGTTTTCCACGGACCAGCCGATTAAATACCTTTTCAAGACGGAGGGAGCTGGGGGGCAGGTAGGGGAGCTGTACCCTCCCTCAGGGCAGGTAGGAGATGGGGAGGAACGGTTTGTGCGAACTGCCCAGTTTACACCTGGTAGTGACATTCGTCTCAGTGGTCCCTTCACAAGTGGTCAGCTGAGACAGATACATTTTTGCTTCTAAATATACCAGTACAATGCTTTTGAAAAACAGGTTTACAGTTTTTTTTTTTTTTTTTACAGTTCTGTCCTTTTTAGATGTTAGGTTCAGATCAATCTAATTGGTCACATGGAACAGTGTTCATCAGATTGAATGTTAACAGCATTTACACCAGACCATAAG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa10575
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019636 | Nonsense | 254 | 309 | 10 | 11 |
| ENSDART00000132373 | None | None | 205 | None | 9 |
| ENSDART00000133821 | None | None | 90 | None | 5 |
| ENSDART00000138676 | Nonsense | 242 | 248 | 10 | 10 |
| ENSDART00000142070 | None | None | 156 | None | 7 |
| ENSDART00000142902 | Nonsense | 175 | 230 | 6 | 7 |
| ENSDART00000143643 | Nonsense | 244 | 299 | 10 | 11 |
| ENSDART00000143990 | None | None | 213 | None | 9 |
| ENSDART00000144901 | None | None | 224 | None | 9 |
| ENSDART00000146967 | None | None | 237 | None | 9 |
Genomic Location (Zv9):
Chromosome 15 (position 20220145)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 15 | 21322771 |
| GRCz11 | 15 | 21258503 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGAGTAAAGGTGGGATCCTATCAAAGGCCTGTGATTACATTCAAGAGCTT[C/T]GACAAAGTAAYAGCCGGTTAGGAGATGAGCTGAACAGCATTGAGAGGTTG
Long Flanking Sequence:
AACAAAAAATACATAATGTACTTAACTGAGCTACATGCGCCAATACACTGATGTCTGTTCAATTAAACAAAAACAGTTGTTATAACTGATATTTTAATATGTGCAGCAAATCGGAGGGTCCGAGAACTTCAAGAGATGAGAAAAGACGAGCTCAGCACAATGAAGGTAAGGGTGTCCAGTTTTCAGATTTAAAAAAAAAAAAAGTGTTAGACGGTTGCTTATGTGAGTTGTTTCTGAGTGTTTTCTTTTATATATTACAGTTGAGCGAAGAAGAAGAGACAAAATCAATAACTGGATTGTTCAGCTCTCAAAAACAATTCCAGACTGCACCATCGACTCCACTAAAACTGGACAGGCATGTGTTCACTGATAATGATAAAATAATTATTAATGTAGTTGTTTCAGTAGAAAGTTCCGGATCATATTTGATTTTGCTGCTGTTTTTATTAAAGAGTAAAGGTGGGATCCTATCAAAGGCCTGTGATTACATTCAAGAGCTT[C/T]GACAAAGTAACAGCCGGTTAGGAGATGAGCTGAACAGCATTGAGAGGTTGAGGATGGATAACCAGCTGTTACGACAAGAGGTATTTTATTGGATTCAGTGACAAACTAAATTAATTTAAACTTTTTTATAATGCTGCACAAAATATCCTTTTAGCATCGATATAGCAATGTGTGCAATAGTCACATCGCAGCATCTGCAGTGTTAAATTTATATATTAGTGTTGCATTTGATCAAGAGCCATAATGAGATTTGTGGATTTTAACCATAATAGAGTCAGAGTTTATTATCTGCATATGTTTATAAGGCCTGTGACTGCATTCAGGCACAAGAAATTGTAACTTTAATAAAGGTTTATTTTATTACCGATTTATACAATGAAGACTATACTGCAGGGGTCACCTATATCGTTCCTGGAGGGCTGTTGTTCTGCAGATTTTAGCTCCAACCCTAATCAAACACATCTGAATGAGCTAATCAAGGTCCTACTAGGTATACTTGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa22630
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019636 | Nonsense | 275 | 309 | 10 | 11 |
| ENSDART00000132373 | None | None | 205 | None | 9 |
| ENSDART00000133821 | None | None | 90 | None | 5 |
| ENSDART00000138676 | None | None | 248 | 10 | 10 |
| ENSDART00000142070 | None | None | 156 | None | 7 |
| ENSDART00000142902 | Nonsense | 196 | 230 | 6 | 7 |
| ENSDART00000143643 | Nonsense | 265 | 299 | 10 | 11 |
| ENSDART00000143990 | None | None | 213 | None | 9 |
| ENSDART00000144901 | None | None | 224 | None | 9 |
| ENSDART00000146967 | None | None | 237 | None | 9 |
Genomic Location (Zv9):
Chromosome 15 (position 20220208)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 15 | 21322834 |
| GRCz11 | 15 | 21258566 |
KASP Assay ID:
2260-8397.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCCGGTTAGGAGATGAGCTGAACAGCATTGAGAGGTTGAGGATGGATAAC[C/T]AGCTGTTACGACAAGAGGTATTTTATTGGATTCAGTGACAAACTAAATTA
Long Flanking Sequence:
TAAACAAAAACAGTTGTTATAACTGATATTTTAATATGTGCAGCAAATCGGAGGGTCCGAGAACTTCAAGAGATGAGAAAAGACGAGCTCAGCACAATGAAGGTAAGGGTGTCCAGTTTTCAGATTTAAAAAAAAAAAAAGTGTTAGACGGTTGCTTATGTGAGTTGTTTCTGAGTGTTTTCTTTTATATATTACAGTTGAGCGAAGAAGAAGAGACAAAATCAATAACTGGATTGTTCAGCTCTCAAAAACAATTCCAGACTGCACCATCGACTCCACTAAAACTGGACAGGCATGTGTTCACTGATAATGATAAAATAATTATTAATGTAGTTGTTTCAGTAGAAAGTTCCGGATCATATTTGATTTTGCTGCTGTTTTTATTAAAGAGTAAAGGTGGGATCCTATCAAAGGCCTGTGATTACATTCAAGAGCTTCGACAAAGTAACAGCCGGTTAGGAGATGAGCTGAACAGCATTGAGAGGTTGAGGATGGATAAC[C/T]AGCTGTTACGACAAGAGGTATTTTATTGGATTCAGTGACAAACTAAATTAATTTAAACTTTTTTATAATGCTGCACAAAATATCCTTTTAGCATCGATATAGCAATGTGTGCAATAGTCACATCGCAGCATCTGCAGTGTTAAATTTATATATTAGTGTTGCATTTGATCAAGAGCCATAATGAGATTTGTGGATTTTAACCATAATAGAGTCAGAGTTTATTATCTGCATATGTTTATAAGGCCTGTGACTGCATTCAGGCACAAGAAATTGTAACTTTAATAAAGGTTTATTTTATTACCGATTTATACAATGAAGACTATACTGCAGGGGTCACCTATATCGTTCCTGGAGGGCTGTTGTTCTGCAGATTTTAGCTCCAACCCTAATCAAACACATCTGAATGAGCTAATCAAGGTCCTACTAGGTATACTTGAAACACCCAGGCAGGTGTGTTGAGGCAAGTTGGAGCTAAACCCTGCAGGGACACCGGCCCCCCA
Associated Phenotype:
Not determined