Busch Lab

ZMP

vps13a

Ensembl ID:
ENSDARG00000039225
ZFIN ID:
ZDB-GENE-030926-1
Description:
vacuolar protein sorting 13 homolog A [Source:RefSeq peptide;Acc:NP_001112365]
Human Orthologue:
VPS13A
Human Description:
vacuolar protein sorting 13 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:1908]
Mouse Orthologue:
Vps13a
Mouse Description:
vacuolar protein sorting 13A (yeast) Gene [Source:MGI Symbol;Acc:MGI:2444304]

Alleles

There are 17 alleles of this gene:

Allele Name Consequence Status Availability
sa21398 Nonsense Available for shipment Available now
sa16081 Essential Splice Site Available for shipment Available now
sa731 Essential Splice Site Available for shipment Available now
sa21397 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa21398
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000009383 None None 318 None 11
ENSDART00000108923 Nonsense 551 3217 18 71
ENSDART00000110359 Nonsense 551 3236 18 72
ENSDART00000111204 Nonsense 551 3194 18 73
Genomic Location (Zv9):
Chromosome 8 (position 54349177)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 52084536
GRCz11 8 52071065
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTCCGCTCAGCTGTCGTCGTTTGAAGTGTCCGGTCTCCCGCGGGAAAAGT[C/A]GGCCCCGATCCTGCTTTCTCCACGTCATGTGGACGGCATGAAGGATAAAA
Long Flanking Sequence:
ATTACAATTAATAAAATGACGGTAGATTATGTTTACTTTATGTACAATATATTACAGTTTAATATATTATTATATAATAAACTTGGCATTTCTCTGTGAAAACTGCACCGCCCCCAATTATTTTGATTACAATAATAAAAAAAAATGCTAAAATAATGAAATCTAAAAGCTTAAATAATAAACAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGTATAATTAAAAGCTAATGGAATTTAAATTGGAAAAATTGAAAATTAAATTAGTAAACCTTTTTATGATGGTAAAGTAACCCTGTCGTAGAGAAAATTAACTTAATAGTGTTTTATGATTTTGATTATATGATTTAATGTTATTTATGTAATTGAAATATATTTTATTAAAGCAGTATTAATTTTGCTATTGTCCTGTCAGGATCTCCGCTCAGCTGTCGTCGTTTGAAGTGTCCGGTCTCCCGCGGGAAAAGT[C/A]GGCCCCGATCCTGCTTTCTCCACGTCATGTGGACGGCATGAAGGATAAAAGTCTGCTGAACCTCATGTTCGAGACCAACCCGCTGGACGCTCGTGCTGACCAGAGACTGCGCATCGAGTCCCAGCCGCTGGAGATCATCTATGATGCAGTGAGGCTCTGTGACAGTTAATATATTCTTCATATATTCCCAAAGGCCCGTTTACACCAAACATGATAACTCTAAGGCTCACGATAATGACGTAGTTGCTACTGATAATGACGTAGTTCTTAAAACAATATGATTGGGATCACTGTCAGATTTTATTCTAGGTTATAAACAATAAAAACCAGTCAGAATCCCTTTAAATCTTTATTTAAAGTTAAAATTTGAATGTAAAGTTAAAAAAGTCACAGTTTTTAAATAATAATTCCAGTGTTTATTAGAGTTAATGTGTTCTTTTAACCTTTAATCAAAATATCTTCCCCTCTCTCATCTATCTTTTCTCCTCCCTGATTGGTGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16081
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000009383 None None 318 None 11
ENSDART00000108923 Essential Splice Site 1142 3217 31 71
ENSDART00000110359 Essential Splice Site 1142 3236 31 72
ENSDART00000111204 Essential Splice Site 1131 3194 31 73
Genomic Location (Zv9):
Chromosome 8 (position 54333164)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 52068523
GRCz11 8 52055052
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGAAGAACATCATCATTCTGGATTGTGACAAAGAGGYACTTTATAAAAAG[G/A]TAGAAAATGCTATTTAGYATMTTAAATATAAATTAATCAACTGGTACACT
Long Flanking Sequence:
TTGTGTTTTTTCGGTCTAATTTTAAATCAAGTTATTGATTATTACAAAATTACTTTATTTTATTCAATAAAATCATAAATAATTATTACAAACCATTTTCAGTTTCGCTTTTTTGGCCAAGTGCATGCAGAATTTTCTGCCCAGAATGTTAATTTCACCGCATGCCTGATTCTCATATTATTGTTTTTTTTCTGCTCCAGCCTACAAGAAGTCAAAGTTTGAGGATGTGGTGAATTTGCACATCCGCGCAGACCTCAACTGTCTGAAGGTGTTCATACGAGGAGAGAAAGCCAGGATCTCTGAGATCAGCATAGAGGGTAATAGACACATCTGTAGATGCACTCAAACACAAAAAACCAGGGAGAGCTTCTAACACAGCATGTTAACTCCCATCAGGACTGGTTTCTGAAGTTCAGATGAAGAAGAAGTCTGTGGAGATTCTGGCTAACTTGAAGAACATCATCATTCTGGATTGTGACAAAGAGGCACTTTATAAAAAG[G/A]TAGAAAATGCTATTTAGCATATTAAATATAAATTAATCAACTGGTACACTTTTATAAACAGTTTTATAGAACACTTTTACAGTGTTTTGAAGATAATCAAAACCTTTTATCAAAGAAATGTTAAAACAACTGAACAGCACCCAGTATTATTACCCATTTTAGTGTAAATTATGTAAAGAAGTTTAATGTGCTTAAAACTCAGGGGTGCAATTATTATTAATAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATCAAAAAAGTACACTTGATTTATAAATATTTCTGCTCCCAACTTTATTTAATAATTATGGAATTATACATGCTTTCCAAATATCAATGTAAAGTCCAGATACACTTTATTTTGTACCCAAAATACAGATAATAACCAAAAAGAAATATGAATAAAAAAATCTATTTAATGTTAGACTTTTAATTTTAAACAAACTTGAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa731
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000009383 None None 318 None 11
ENSDART00000108923 None 1576 3217 39 71
ENSDART00000110359 None 1576 3236 39 72
ENSDART00000111204 Essential Splice Site 1562 3194 41 73
Genomic Location (Zv9):
Chromosome 8 (position 54321231)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 52056590
GRCz11 8 52043119
KASP Assay ID:
554-0638.1 (used for ordering genotyping assays)
KASP Sequence:
ARTAGCTGTATGATTTGTGTTATTCCTCTTCTAGCGGCTCCTGCTCCACC[A/T]GTGGTTGCTAAAACCGAGATGAATGTGGTGGTGAAGAACCCAGAGATCGT
Long Flanking Sequence:
ACACATTCACACACACACTCATACACTACGGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACGGAGCACCCGGAGGAAACCCACGCGAAGGCAGAGAGAACATGCAAACTCCACACAGAAACGCCAACTGAGCCGAGGTTTGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTTCTGCGCCACTGCTTCACCTTGCTATATTTATTATTATTATTATTATTTTATTATTATTATTATTATTATTATTATTATTATTATATTAAGGTAGGAGAATAAAATGAGTTTGTTATTTAAATAATAAAAAATTAAGTAAAAAGTCAAACCAGTTATTAATTATGAATTATATTACTTCACTATTATACAGTACTAGTGTTGTTTTTGTATTTATAGTAATGTTTAAATAACGTTGATAGCAATAATAGCTGTATGATTTGTGTTATTCCTCTTCTAGCGGCTCCTGCTCCACC[A/T]GTGGTTGCTAAAACCGAGATGAATGTGGTGGTGAAGAACCCAGAGATCGTGTTTGTGGCGGATCTGACGCGTGCTGAAGCTCCGGCTCTGGTCATGACCACTCAGTGTGAGCTGGTGATGAAGAGCGAGCCCAGCGGTCAGTGCATGACGGCCGCCATTTCAGACCTGAAGATTGTGGCCTGTCCGTTCCTGCGGGAGAAGAGGGAGAACAACGTGACGACGGTCCTACAGCCCTGCGAGGTTTTCTTCCAGAGCCGACAGTCAAACACTGAGCCGCAGTGCATCGAGCTGTCCATCAGCGCACTCACGCTCAAGGTGAAATCACCACTAACATAATCCTGCAGTTATGTAGTATACAGCTGATGCTTGTGTACATGTTCAATCAAGTGTATTAAGTGTATATAATACTGCTGTCCTCTTCAGATCTTAACCCTTGTGTACTGTTCAAATTGACTCCCCTTTCATTATGTTGCGGTCTGTTTTCGCCCTATTGACTGATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21397
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000009383 None None 318 None 11
ENSDART00000108923 Nonsense 2268 3217 47 71
ENSDART00000110359 Nonsense 2260 3236 47 72
ENSDART00000111204 Nonsense 2246 3194 49 73
Genomic Location (Zv9):
Chromosome 8 (position 54307985)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 52043344
GRCz11 8 52029873
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTACACTCGCCGTACTGGATGGTGAATAAAACAAGCCGACTGCTGCAGTA[C/A]AAGGCGGATGATATTCATCGCAAACACCCCAAGGATTACGACATGCCGCT
Long Flanking Sequence:
AATTGTCACCACTCACCAATCAGAATCTAATATCTCAGACATCTGTGAAATAATCTGCAGTAACAACAACCCTCTGGATGTGCTTTATTTATCCTTTACATACGTTTTTAATATTTGATTGTCATGAAATATTGTTAACTTCTGCATGTAACAGTCATTAACAGTATCTTGTTTTGTTGACAGGGCATCGGAGATTCCCCCTCGGTGTCGCTGAAGGAGGGCCACTCATCCCAGATCCACACCGCCATCATGGACTTCTCCGTGTTGGATCTGAGGCTGCTGGGATACTTGCAGCAGGACTGGGAGTCTCAGTACAGCCTCAGCAGTGAACAAGACGAGATCAGCTTCATTAAGTTTCGCTCGCTCGCACGTGAGGAGGAGACTGAGAGCCGGCCGGAGCTGGACATCGCTATGCATGTGAAGAAGGAGGAGGGTCAGGTTGTGCTGGCCGTACACTCGCCGTACTGGATGGTGAATAAAACAAGCCGACTGCTGCAGTA[C/A]AAGGCGGATGATATTCATCGCAAACACCCCAAGGATTACGACATGCCGCTGCTCTTCTCCTTCAAGCCACGCAACTTCCTGCAAAACAACAAGGTTTGGAAGAAAGTTTTGTTTTTTCTGTCTGGCTGACATTAGTGAGGGTTTTTTCTGGTTAACTTTTTTTTTGTTTGTTTATTAAACATTCAAATAATAGTAATAATAATAGTACAAATAATAAATTAAAATAAATTGTTTAATTGTTAAATTCCGGCTGACAGGTTCTTCCTGATTTATCGCTTTTTTTATTTTTTTAAACCTTCAAATAATAGCCAGACATTATCATATTGCATTGTTAAACATATTTAACACTATATCCAACCGGAATATTACAAACAAAATAAACAAATAATAAAGTTAAATAAAACTTTTATTATTATATATAAACAAAGTAGTAAAATAATTATTTAAAATAAATAAAAGAAACATTTTCAAGCAGAATATTCAAAACAATTTAGTGAATA
Associated Phenotype:
Not determined