Busch Lab

ZMP

rpap2

Ensembl ID:
ENSDARG00000038397
ZFIN ID:
ZDB-GENE-050522-420
Description:
Novel protein [Source:UniProtKB/TrEMBL;Acc:B0UYH6]
Human Orthologue:
RPAP2
Human Description:
RNA polymerase II associated protein 2 [Source:HGNC Symbol;Acc:25791]
Mouse Orthologue:
Rpap2
Mouse Description:
RNA polymerase II associated protein 2 Gene [Source:MGI Symbol;Acc:MGI:2141142]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa38314 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa32852 Nonsense Mutation detected in F1 DNA Not yet available
sa45091 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa38314
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000056034 Essential Splice Site 169 601 7 12
Genomic Location (Zv9):
Chromosome 2 (position 10605273)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 11030369
GRCz11 2 10813968
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTCTCCAAAAAGTCCACCTGAGATTAAGCTGATGAAACAAGGAGATGGG[T/G]AAGTACTTGCTGTTTCTCTTTAAAAAAAATTATTTAACTTAAGATGTTTC
Long Flanking Sequence:
TTCGACTCCTCTTGTTCTCTTGATGTGAGAAATGAAAAATGATGCATTGTAGCTATGTTCAGATGATAATTATAGTGCATGCTCTCGTCTTAAGTAAATTATTTAGAATTATGTTTCCCATTTAGCCTAATTCAAATAAATATTTAAATAAAAAAAACGAATACTTAAAAAAAAAAAAATGTGGGGACGGTGTCATGGTGAAAAAGTGATGTCACCGGTGTTGCGTCTTAAAACCGGTGTCATCGTCAACACCGTCTATCGTGGCAAGCCTACCTCAGAGTGGAGGAAAACATCCCCAATAGTACATAAGGGTTAAAATGGCAATCTTAACATTTAGTAAAGGACTTGACTAAGCAATTTAATGGATTTTTGCTTAATGACGTTTAATTTTTTAAAGAGAAAATCTTATTGACCCCAAACATTTGAATGCAATTTGTTTTTGTTTTCTTCTCTCTCCAAAAAGTCCACCTGAGATTAAGCTGATGAAACAAGGAGATGGG[T/G]AAGTACTTGCTGTTTCTCTTTAAAAAAAATTATTTAACTTAAGATGTTTCATGAAGGATTATTAAAAAAAGAAAAGATATTATACTTCTGTAAATGAACTAGCCATTTTATTTTTCACCGGTCCACAGAGGCAGCTCAGGACAGGAGATAAAGCTGATTGACAAGCCTATAACAGAAGCAGACATCGACAATCCCATCGAGGACATTCCCGAGTCTAACAAGGACTTGATCCAGGGTGAAAACGGTGACATCGAACAAGACTTTGTCTCCAGTGTGGTGTCCAATCAGCACAAACAAGTTCACTGGGGAAAACTGCCAAAGAGAGATGAAGTGAGTGAAGATGCTGCTGAATATTCACATTCAGAACATGAACAAAGAATCAATGGAGAAAATAAAGATGAAAGCGAATCTTCACAAACTCCTCAACCACAAAAAGACACAACCGATCATCCTGCACTGGAAAAAAACGCCTCTGAAATTGAAGGGACTTTGGAGCTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32852
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000056034 Nonsense 312 601 8 12
Genomic Location (Zv9):
Chromosome 2 (position 10604717)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 11029813
GRCz11 2 10813412
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGGATAAATCAACCCAACAGGAAGGTGAAAACACAAGCTCTTCACAGCCT[G/T]AATCTGACATCTCTGTTCCTGTGGCTGGCGACCTGAACATTACTCAGGTG
Long Flanking Sequence:
GGATTATTAAAAAAAGAAAAGATATTATACTTCTGTAAATGAACTAGCCATTTTATTTTTCACCGGTCCACAGAGGCAGCTCAGGACAGGAGATAAAGCTGATTGACAAGCCTATAACAGAAGCAGACATCGACAATCCCATCGAGGACATTCCCGAGTCTAACAAGGACTTGATCCAGGGTGAAAACGGTGACATCGAACAAGACTTTGTCTCCAGTGTGGTGTCCAATCAGCACAAACAAGTTCACTGGGGAAAACTGCCAAAGAGAGATGAAGTGAGTGAAGATGCTGCTGAATATTCACATTCAGAACATGAACAAAGAATCAATGGAGAAAATAAAGATGAAAGCGAATCTTCACAAACTCCTCAACCACAAAAAGACACAACCGATCATCCTGCACTGGAAAAAAACGCCTCTGAAATTGAAGGGACTTTGGAGCTTTTGAATCAGGATAAATCAACCCAACAGGAAGGTGAAAACACAAGCTCTTCACAGCCT[G/T]AATCTGACATCTCTGTTCCTGTGGCTGGCGACCTGAACATTACTCAGGTGGGAATGAGTAAAAGATCAGCTGCGGGCCTCAAAGGCCTGTTGAAGGATCATCATAAAGCTAAAACGGCTTCTACAGCCATCAGTCAGTGTCTTCTGGAGCGTCTACGGCAAGCCTTTATAGAGTGGAGAACTAAGGAAACCATGATATTTCTTTATGGTCCGGATTACGCCTCAGGGATGCAACTGTCTACAGCAGGAGCATGGGAAGAGGAGCAGTTGGATGAAGATGACCTGGATGAGGCTGAGGTGGGCGTGAGATCAGCTGAAGGAGGACCTTCCAGAACCAGCGCTCCAGTTCCTGATGTGGAGACTCTGAGAAAAGAGACAGAAATGTTGGAGCTGAGAGTGAGGGAGTTTTACAAAGGAGTGTGTGTTCTGCCGGAAGAGGTCGAGACGGCCGCTGTTAAAGAGACTGAACACACACAGGTGAGGGCTTTTGAAAGTAACATG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45091
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000056034 Essential Splice Site 551 601 12 12
Genomic Location (Zv9):
Chromosome 2 (position 10583043)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 11008139
GRCz11 2 10791738
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGGATTTATTTACATGCTCATAGTTTAAAAATAATTTTGTTTGTTTGTTC[A/G]GGTTAACAGAAGTGTCACCATTGTTGCGAGAGTCGTTGGCGAGCGTGTCT
Long Flanking Sequence:
ACAGAAGCCCAAAATGGAGGAAAAAAATACGCAGTTTTAAATGATGATGATTTATGGCCATATAGAAACTTTTCACAAGACTGTCTTGATGCGTTTATCGGTCATCAGCATCTTAAATCCTTGAAAGTTTTTAGTTGTTTTTTAAAAAAGTATGAATGTTTATGATTGTATTTATGTATGTATTATATCATCTTTTCATTAAATTCCAAAAAATTACAATTACAGCTTATGCAGTGTCTATGTGGTTGGGTAGGACAGGAAATTTGACGTTGTTCTCTTTTCTGGCTGCCATTATCAGCATCACACAATTTCCTTTCTTTTTCTGAAAGTCTTGATAACACCATCATGGAGTTTTGTTTTATTATTTGAGCAAATAGGATTGTAAAAAAATGATTTCTTCCATTCACTTCACTCTGTGTACCCAAATATTGACTGTTTTTACTTTCAAAATGGATTTATTTACATGCTCATAGTTTAAAAATAATTTTGTTTGTTTGTTC[A/G]GGTTAACAGAAGTGTCACCATTGTTGCGAGAGTCGTTGGCGAGCGTGTCTTCGTTAGAATACATCTCCTGTTTCATGAAAGAGCTGAAACTGGAGGACAAAGATCTTCACAACCTCGTGCTGCTCTTCAAACCGTGCGTCCCTATACAAACGTGATGTACAGAACACTCTTTTAGAGATGAAAATAAAAACCTGTCCCAACACAATGGTTCTGTGCTACATTTGAGTGTTAAGTCATTCTGCAACACAGCCTCAGTGGAAATATGTGCTTCAGCCTACATTTCATACATTTGACTGGAGTTTCTAGGTAAGATAAATGTTACAAGGCAATTTGATGCCGATAACTTTGTTCATTTTCACACTAATTTTATTTGCATCAATACATTATAGACAAATAGGGTTCATTAACGTTCAGGTCATCAAATATATTCCACAAACAACTTAACAGTGTCTTTAATTTGTAATGAGTGTTGTGTTTTGTGTTGTGTTGTACATGGTTCC
Associated Phenotype:
Not determined