Busch Lab

ZMP

pdlim5

Ensembl ID:
ENSDARG00000038267
ZFIN ID:
ZDB-GENE-040718-401
Description:
PDZ and LIM domain 5 [Source:RefSeq peptide;Acc:NP_001002654]
Human Orthologue:
PDLIM5
Human Description:
PDZ and LIM domain 5 [Source:HGNC Symbol;Acc:17468]
Mouse Orthologue:
Pdlim5
Mouse Description:
PDZ and LIM domain 5 Gene [Source:MGI Symbol;Acc:MGI:1927489]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa13197 Essential Splice Site Available for shipment Available now
sa18440 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa13197
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000099945 Essential Splice Site None 551 1 14
ENSDART00000145371 Essential Splice Site None 220 1 5
Genomic Location (Zv9):
Chromosome 5 (position 8559226)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 7329878
GRCz11 5 7834516
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTCANNNCNNNGGAGTTTTGTTTTSCRTTTTGGGAAAAGTGMTGCTTTCTAAAGG[T/A]AAATCCATGATTGCATTGTTTATTGTRCTGTTGTTGTGGTTGCCAGGTTT
Long Flanking Sequence:
TGTAACGAGTGCAACATTTCTGTGATTGATAGCAGATGAAGAGCGCACTGACTAATGCATGATGACAGTACAGATCACATGTGGATCTCATCTCTATTCCAATGTTTACAGCAGTCTTACTCTTTTCCCATGGAGAATTACTGGACAGTATGGATACACATTGGCAGGCTAAAGCGTTCCCTCTTGGCGGGACGTCCAATCTGTCCCGATGAACATTCTGATCTTGATATCCTAATCTCAGAACCTTTGTTTTGGGGTTCTGGGGGCTTTATGATGGTTACTCCGTAATGTTTGGCAGCACGTCTAAGGTCTGTTCCCAAAATATCCGAGTGTAAGCCAAGCATCCCCCATCCCAACCCCCAAAACACACACACACACCCTTTGATAGATGAGTATAAATTGAATTTCTGCCGTCTGTTTGGATCAGTTTGTGTCAGAGCTTTAGACTTGTTTCACGGAGTTTTGTTTTCCGTTTTGGGAAAAGTGCTGCTTTCTAAAGG[T/A]AAATCCATGATTGCATTGTTTATTGTACTGTTGTTGTGGTTGCCAGGTTTCAATAACATATGCAGAATGTTTACATTTTTATATAATGATATATCAAAGTGTTTTTTATATAAAAATGTTTGAAGTAGCAGTAGATTTGTTTTGTTTTAAAGCATTGAATACATTTATTTAGCAAGGATGCATTAAATTCATCAAATGTTAAAGACATTAAATATTTTGCTGAAGATTTTTATTGTAATGAAATGCTGTTGTTTTGTTTTTACATTCAATTAATTAAAAAATCCTAAAAATGTATTCCAGCTTTTAACCTGTTAGCCAGCACTCAATTTTAGGGATTTACAGCTACCTAACTTTAAATAGTAACAGTTTCTGACTCCAGTAAGCTACAAACACAATTATTTATTATTGGAAAGAAGACACTTTGAGCTTTACTGTGTTAAAAGGGTAAGTTACATGTTAAAAAATATAAAAAGTTATATATTATGAAGTCATGAGAAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18440
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000099945 Nonsense 212 551 5 14
ENSDART00000145371 Nonsense 212 220 5 5
Genomic Location (Zv9):
Chromosome 5 (position 8622879)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 7266262
GRCz11 5 7770900
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ARAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGC[C/T]AGGGTGAGAGCTGTCAGCTRAATGGGTAAGAGTTTGATTGAYCCTTAATG
Long Flanking Sequence:
AACAAACATTTAAAAATATCTATTTTGCTATTTTGCAGTCATTGTCAGTTGTTTATGTTTCCTGAATCTCCTGTAAAACATTCATTGTCTGTTGACTTGTTGCATTACTGTTGTGGTTTGGTTTGAGTCCTGCATGTGCTTCCCTCCATGTTCAGGATGATTGTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCATTCCATTCTCCTCTGACATCACAAACTCCACCCACATCACGTCATCCTCCAATAGGAGCGCTCGTCCATTTGGAGGGGCGGGGTCACCACCCATAGCCTTCATTCCCTCCACTGCATCTGCTTTTGCACCCGCCTCCACAGCTCAATACCCTAATCCACTGTCTCCGCCCACTGATGGCTCACCGAATCATCAGCCGGCGGTGCCCCGCCCATCAGTCTATAACACACCCATCAATCTTTACTCTGATGAGAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGC[C/T]AGGGTGAGAGCTGTCAGCTGAATGGGTAAGAGTTTGATTGACCCTTAATGCCTCACCCAATCTATAAACATGTGTGATGCCTGCTTTTTTGAGGAAGAAACTGTATAGGTGCACACACAAACTGACCCAGGCAATAATTCTCTATACATACTAGGTCAGTGGTTCTCAAAATATTTTCATCAAGTACCACCTCAGAAAAAAATTGTCTCTCCAAGTACCACCAAAATGAGCAGTATTGAAATATAGTAGCGTAGTAGGCCCAGTACAGCAGCTACAACTCTGCACAGTAAAAAAAAAACATGGCAGATTACCTCAGAAATATAGGCTATATGTCATATATGGCACATTATATACATACTGTAATTTTTGATACATTTAGAAATATGTATAGCATATACATAACATATTTCATTCCTCCGCGTACCACTATAAGAAAGCCCGCGTTCCACTAGTGGTACACGTACCACAGTTTGAGAACCACTGTACTAGGTCATACCCAA
Associated Phenotype:
Not determined