ZMP

col18a1

Ensembl ID:

ENSDARG00000036558

ZFIN ID:

ZDB-GENE-030516-3

Description:

Collagen type XVIII alpha 1 [Source:UniProtKB/TrEMBL;Acc:B0S8G3]

Human Orthologue:

COL18A1

Human Description:

collagen, type XVIII, alpha 1 [Source:HGNC Symbol;Acc:2195]

Mouse Orthologue:

Col18a1

Mouse Description:

collagen, type XVIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88451]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa34722	Essential Splice Site	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa34722

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000007058	Essential Splice Site	842	1383	27	41
ENSDART00000053118	Essential Splice Site	843	1385	27	42
ENSDART00000097295	Essential Splice Site	808	1349	28	42
ENSDART00000130434	Essential Splice Site	1104	1645	27	41

Genomic Location (Zv9):

Chromosome 9 (position 43042116)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	42167286
GRCz11	9	41969073

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AGCAGGACCTCCTGGTGCAAAAGGTGAATTCGGAATGCCAGGCAGACCTG[T/A]AAGTCTTTCACAAAACAACTTTCATTAACCTACAACTATTGTATGGCATC

Long Flanking Sequence:

GCTTAACATGAGATGTTATAAACCTCTGCTCTGAAAAAAACAAACAAACTTGTTTACAGGGGGAGAAAGGAGAACCTGGACTTATTCTTGGACCTGATGGAAATCCACTTTACCTTGGTGGATTGACAGGACAGAAGGTTGGTTTATTCATTCAAAAGACTTGTTTTTGGTCTCTAAATAATACAGATTAGTCCTTTTTTGTCTCTATTGTTGTCATAACTTCACTAGCAATAATAAGTAGGTAAATATTATATCAATGTACTTTTTTATTTAGCTAAATTTGATGTTCTTTTTATTTTACTTTCTGTAGGGTGAGAGAGGTATTTCTGGACCAGTCGGACCTCCTGTATGTTTCTATTTTTATTTATTTTTATTATTCAGATTTAAATAAAGAACTATTTTAGATGCATCCGCTAACATCTAAGTTTGATCTCATTTTTTTCAGGGTCCAGCAGGACCTCCTGGTGCAAAAGGTGAATTCGGAATGCCAGGCAGACCTG[T/A]AAGTCTTTCACAAAACAACTTTCATTAACCTACAACTATTGTATGGCATCATATTTAAGTGAGTATGTAATTCGATTTTACTTAACAACCTGATTTTATGACTGTAGGGTCGTCCAGGTGTGAACGGATATAAAGGAGAGAAGGGAGAGCCAAGTTCAGGCTCTGGATATGGTTACCCGGTAAGTCCACCACCTCCTCTTGAATATGAAAATTAATGCAGTTCGTTCAATCAGTGCTTGTTATATAGATGGCTTGCCCTCATATGTTATCTTGTGGCTTTTCAAGGGTCCCCCTGGTCCCCCAGGACCCCCTGGTCCCCCCGGACCCGCTGTGCCCTTGGACAGATTTGGCGTAAGTGATTTTTGTGTCATATAAGCTGTAATTCATGCATGAAATGCTGGAAAATGAGCTCAATATGCTGGCTGTGTTAAACTGAAGTGATCATGATTGCACCAGCAATAATTTGCAACCTCATTTTTTTCCCATTTCAGAGATATGAA

Associated Phenotype:

Not determined