Busch Lab

ZMP

GPC6 (3 of 4)

Ensembl ID:
ENSDARG00000036468
Description:
glypican 6 [Source:HGNC Symbol;Acc:4454]
Human Orthologue:
GPC6
Human Description:
glypican 6 [Source:HGNC Symbol;Acc:4454]
Mouse Orthologue:
Gpc6
Mouse Description:
glypican 6 Gene [Source:MGI Symbol;Acc:MGI:1346322]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa8472 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

This allele has been removed from public view.

Allele Name:
sa27500
Status:
Less stringent filtering
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000052984 Nonsense 30 499 2 11
Genomic Location (Zv9):
Chromosome 9 (position 55389541)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 53866012
GRCz11 9 53405609
KASP Assay ID:
2260-2610.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTAACACTCAGATGGAGGAAAGCTTCAGTCACAGAAGCTCTCATGACTTC[C/T]AGAAGCTCATGGACGATGCCAGCGAGGAGCTCAGAGACACATTTATGAGC
Long Flanking Sequence:
TGAGCTAGCATGAAATATGCAAATCCGAAACAAAACAAAATTATGGAAATGACCAATTTCTGAGAGAAAGCATAAGCTCTGCTACCCACATGAACACAGCCGAGGGAAGAAGAGAGGACTGAAGAGACTGTGAATGCTGCTGTTATCAGAACAAAAGGATTATTTATAAATATATAAAACAAATGCTGGAATAGTTGGCAGTTCATTCCGCTGTGGTGACCCTTGATAAATAAGGGAGTAAGGAAAATTAACGAAAACAGTTTTGTGGAAACTTAGAAACATTTAAATTCTCAGGATTCTTTGATGAACGAAGTTAAAAAGAACAGATTCTTTAAATGGAATAGAATAGAATTGATTCTGTGTGTGTGTGTTTGTGCGTGTGTGCGTGCGTGCGCGTGTGTGTTTCTTCAGGTGAGGATCTGCGTGTTTGTGCTCCTCTGGAAGCCTGCTGTAACACTCAGATGGAGGAAAGCTTCAGTCACAGAAGCTCTCATGACTTC[C/T]AGAAGCTCATGGACGATGCCAGCGAGGAGCTCAGAGACACATTTATGAGCGGACATAAAAGGTTTGATGGTACGATTTCTTCTTTAACATTCATTAACTGTACTGAGGACTCTATTCCTCACTTGTTTCATACAAACAACTAATTTAATAGTAATAATAATAATAATACTTTTTATTTGTATAGCACTTTTCAATTCAAGTGTATATGTATAGTGGTTTTTATAATTCTTTAATATAAGTTATTACATGAGCATACACTCACTGGCCACTTTATTAGGTACACCTGCCAAACTGCTCGGTATGGCAAATTTCTAATCAGTCAATACATGGCAGCAACTCAACAAGTCATTACTCCCAGCAGGATAACGCACCATGTTGTGAAGCGTAAATCATCTCAGACTGCTTTCTTGAACATGACAAATCATAACAATGACAAAAAAAAAAAACTTATTTCAGCATAGTAACTCATATGTAATATACCGGCATGTCGAAATGACTTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa8472
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000052984 Nonsense 352 499 9 11
Genomic Location (Zv9):
Chromosome 9 (position 55351796)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 53828267
GRCz11 9 53367864
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGCTGAAGCATTTCCRGTCGTTCTGGGTTTCTCTGCCGCTGGTTTTCTGT[A/T]AGGAWGAACAGATTTCAGCAGATGGACAAACTGAAGATCAGCAGTGCTGG
Long Flanking Sequence:
TTTTATTTTATTTTATTTTATTTTATTTTATTATATTATACTTTATTTTATTTTATTATACTTTATTTTATTTTATTTTATTATATTTTATTTTATTTTATTTTATTTCATTTTATTTTATTTTATTATATTATACTTTATTTTATTTTATTATACTTTATTTTATTTTATTTTATTTTATTATTCTTTATTTTATTTTATTTTATTTTATTTTTATACAGTAGAACATTCCAATCTCAAACAACTAACACTAATTATACTTAGATTTCTAGCAATAGCAGTCAGAGAACCATCAACAACTGAATATCTTCACTCACCATGTAGAAAACCAGCCAAAACCTGTTGTGCAATAGTCAATGTTTTAAGTGTTAAGCTGATTCAAACGTCGAGTGTTTCATCACTGACTTGTTTTATCACTGCTGGTCCTCAAGGTGTCTGAGATGAAGGAGAAGCTGAAGCATTTCCAGTCGTTCTGGGTTTCTCTGCCGCTGGTTTTCTGT[A/T]AGGATGAACAGATTTCAGCAGATGGACAAACTGAAGATCAGCAGTGCTGGAACGGACATCACAGCGGCAGGTGAAGACCCTCATGTGAGCCCGCAAACATGCGAGATTCAGAGATTCACACTCATATCTCAAGCAGTGTTGGGTGTAATGAGTTAAAATGCCTAGATACTAGGGCTGAACAATATATCCTTTAAGCATTGATGTCGCAGTGTGTGTATGTCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGGGTTCCGAAAGTTTGCTTATTTAATTCCCCTATAGCACATGTGTTTGGACTGGAAAACCGGAGCACCCAAAGGAAACCCACACCAACATGGGGAGAACATGCAAACTCCACACAGAAATGCCAACTAGTCCAGCCGGGGCTCGAACCAGCAACCTTCATTCTGTGAGGCGACAGTGCTAACCACTGAGCCACCGTGCCGCCTAAAATATTATAATGCAACAAAAATTTAAAAACTAAATTTTATATA
Associated Phenotype:
Not determined

Mutation Details

This allele has been removed from public view.

Allele Name:
sa5577
Status:
Allele not cryopreserved
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000052984 Essential Splice Site 375 499 10 11
Genomic Location (Zv9):
Chromosome 9 (position 55348990)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 53825461
GRCz11 9 53365058
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTTATTATTAAATTAATAATAAGAAAAATAATATATATATATAATTTTA[T/A]CCAGATATATTGCAGAGGTCCAGAAGGATGGCCTAGCTCAGCAGGCCAGT
Long Flanking Sequence:
TAATTTGTTTGAATTAATAATAATAATAATAAAAAAAAATGTATCCAGATACATTGCAGAGGTCCAGGAGGATTATTATTATTTTGTTTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATTTGCTTTGTATTTTGCTTGTATTTAATTTTTTATTTTTTATTTGTATTTAAGTAGATTTTTTTTACATTTTACTTAATTTTTTATTTGTTTATTTAATAATAATAATAATAATAATAATAATAATACAAATTATCCAGATACATTGCACAGATCCAGGAGGATGATTTTTTTTATTTGTTTATATTATTATTATTATTATTATTATTATTATTATTATCATTATTATTATTATTATATTAATTATTTACTTTGTGTTTTGCTTGTATTTAATTTTAAAAACTTCGATTTGTTTTACATTTTATTTATTCATATTTTTTATTATTAAATTAATAATAAGAAAAATAATATATATATATAATTTTA[T/A]CCAGATATATTGCAGAGGTCCAGAAGGATGGCCTAGCTCAGCAGGCCAGTAACCCAGAGGTCAGTGTTGATGTTTCCAGACCGGATTCCCTGATCCGTCAGCAGATCCTGGCTCTCAGAATCATGAGCAACAAGCTGAAAAACGCTTACGACGGACACGACATCAACTTCCAGGACTCCAGTAAGACTCTGTTTGACACACACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCAGCAGGCCAGTAACCCAGAGGTCAGTGTTGATGTTTCCAGACCGGATTCCCTGATCCGTCAGCAGATCCTGGCTCTCAGAATCATGAGCAACAAGCTGAAAAACGCTTACGACGGACACGACATCAACTTCCAGGACTCCAGTAAGACTCTGTTTGACACACACAGACTTTTCCGGAAAATGATCGACA
Associated Phenotype:
Not determined