ZMP
LOC100007362
Ensembl ID:
Human Orthologue:
PCDH20
Human Description:
protocadherin 20 [Source:HGNC Symbol;Acc:14257]
Mouse Orthologue:
Pcdh20
Mouse Description:
protocadherin 20 Gene [Source:MGI Symbol;Acc:MGI:2443376]
Alleles
There are 2 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa35160 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa35159 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa35160
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000052912 | Nonsense | 316 | 881 | 2 | 2 |
Genomic Location (Zv9):
Chromosome 11 (position 43998181)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 11 | 42624696 |
GRCz11 | 11 | 42916777 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AACGGGTCAGCCAGGAAAGCAAAAGCTTATTTCACTTGGATACAACGACT[G/T]GAGTTCTGAAACTAGCAGGAAAGATCAACAACAACAGTGCGAAGCTATAC
Long Flanking Sequence:
TGGATGAAATCCGGCTGTCTGTGCCAGAAAACGCACCTGTTAATGCACGGTTTGCGGTGGAGCAGTCCGCAGTGGATCCAGACATCGGGATTCACAGCGTTCAGACCTACTGGCTTAATAATGACTATGGAGTTTTCACGCTGGACGTAGAGGAGAACGAAGGAGGAGAATTGACGCCGTTTCTCATCCTAACCGAGTCTCTTGATAGAGAGGCGCGGGCTGAGTATGTGACTGAAATTATAGCAGAGGATGGAGGGTCTCCGCCTCGTTTTGGCAATGCAACTTTGAGGATTATCATTAGCGACGTTAATGACAACTGCCCCAAGTTTAGAGAGTCTCAAGTGAAAGTGACTCTGTATGGAAATGCCACTAAAGGCATGCAACTGGCTCGTCTACAAGCTTATGATCCAGATGAGGGAGCGAACGCCTTGATTACGTATACGTTCAGTGAACGGGTCAGCCAGGAAAGCAAAAGCTTATTTCACTTGGATACAACGACT[G/T]GAGTTCTGAAACTAGCAGGAAAGATCAACAACAACAGTGCGAAGCTATACAAGATAAACATACTAGCCAATGGGGCGGGGTGTATTCCTGACGTTGCTATGGTTAGCGTGCATGTCATCAAACAACTCTCTGGTCCTCCGACGGTTGTACCGCGTTACATTGCGTTTGAGAAAGATGGCGTCGTGAGCTTAAGCGAATCTGAGCCTCCGTTTTCCCCCATTGCTTTTTTTACCATCAAAAACACCGAGGCCCAACAGAAGCTGGAGTGTTTTCTGGAAAGTGCAGGTCCTTTTAGGATTGTGCCTTATCAGGGTTTAAAAAACGAGTACTTGCTGGAAACCACTGATGTCCTGGATTATGAGCTGCAACAGGATTATGAAATAGTCATTGTGGTGCGTAATTCCCACGGATTAGCAGTTAACACTGTGGTGAAAGTCCATGTGTTGGATGTCAACGACAACGCTCCGGTTTTCAAGCAGTCCTTCGTTGAAATCGCCGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa35159
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000052912 | Nonsense | 740 | 881 | 2 | 2 |
Genomic Location (Zv9):
Chromosome 11 (position 43996909)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 11 | 42623424 |
GRCz11 | 11 | 42915505 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTAAGAGAACTGACGGAGAACCAGGGTCGTTTGACATCGATCCGTACACT[G/T]GAAACATCACCCTGAGGAAAGCCTTGAACAGTCGGGGGCTTTATAGTTTA
Long Flanking Sequence:
ACAGCCCGCGATTCATCAACAAAGACTTCACTTTCTTTGTACCAGAGAACTTTCCAGGATTTGGCGAAATCGGCGTGCTTACAGTCACAGATGCTGACGCCGGAGAAAACGGCTGGGTCGCTCTATCAATCCTCAACGGAAGTGACATCTTTGTTATTGACACCGGACGAGGAGCTCTAAGAGCCAAAACACCATTGGATCGAGAGCAACAGGGGACGTATTACGTATGGATCGAAGCTATTGATGGAGGAGAGCCTGCGCTTTCTTGTGTCACAATGGTGACCGTTCTCCTCCTGGACGTCAATGATAATCCTCCAACAGTTCTCTTTCCGCAATCCAACCAGTCCTTCATGCTGGTGCTTCCTAGCACAGTTCCGGGAACATCTATAACTGAAGTGTACGCTGTGGATCGGGACACGGGAATGAATGCTGTTATTGCTTACAGCATTATTAAGAGAACTGACGGAGAACCAGGGTCGTTTGACATCGATCCGTACACT[G/T]GAAACATCACCCTGAGGAAAGCCTTGAACAGTCGGGGGCTTTATAGTTTATGGGTTAAAGTTCGAGATCACGGTCAACCTGAGCTCTACTCCACCGTGCTGGTTAACCTGTTTGTGAATGAAACGGTCAGCAATGAGACGCTCATTCAGAGTTTGTTGCCGAGAGTTGTGGATCTGGATCACGGTGAAGCTCCTCCGGTTAAGGAAGGGAGAGAGGGAGAACGAGTGCCAAATATGTGCAACGAGTATAAAGTCATACTGCTTGCATTGACGGCGACTTGCATGGGACTGTTTTTGACTGTCGTGTCGTTGGTGACGTACATTTGCTGCAAGAAAAGAAAGACGAAAAAGAAGAGGCAAGGCACCGAGACTCTCAAGCTCAACCATGAGATGGTGGAGAAAAACCTACTGGAGATTTCAAACATATGACAGTAAACTGCTCAGCAGGCAAAATCTGCTTGTACTGCCCAAACTATTCACTGCAAAAATGCTTGACAATGA
Associated Phenotype:
Not determined