Busch Lab

ZMP

rxrab

Ensembl ID:
ENSDARG00000035127
ZFIN ID:
ZDB-GENE-990415-243
Description:
Retinoic acid receptor RXR-alpha-B [Source:UniProtKB/Swiss-Prot;Acc:Q90415]
Human Orthologue:
RXRA
Human Description:
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:10477]
Mouse Orthologue:
Rxra
Mouse Description:
retinoid X receptor alpha Gene [Source:MGI Symbol;Acc:MGI:98214]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa16874 Nonsense Available for shipment Available now
sa1205 Nonsense F2 line generated Not yet available
sa11783 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa16874
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000016321 Nonsense 96 379 3 9
Genomic Location (Zv9):
Chromosome 5 (position 68079030)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 63820530
GRCz11 5 64501694
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGGACGGTCAGAAAGGAYCTGACGTACACTTGCAGAGACAACAAGGACTG[T/A]ATGATCGAMAAACGCCAACGCAACCGATGCCAGTACTGCCGCTAWCAGAA
Long Flanking Sequence:
AGCAAGTAATGCAATAACGTCCACACAAGCTACATTTACCGATCGCTTGCCCAACACTGGCGAATTTGATGTGCGAAAGAAGCGAGTAAATTCAAAAATGTTCACGTCTATTTATTCGTGTGTGCCATGTCTGGTGTGAACACAGCATTAGTCACTTCGGACAAAAGTGTCTGCTAAATGACTAAATGTAAATCCCCCAAATGACCAATCAGAATCAGTCATTCCATAGTGTCGTTTCCTTATATTGTATTGCATTCAATAAATTTGGTCTCTCCATATGCTCTGCCTCTCATGTAGTATGGGACAAAAACAGATGTGGTGGCTGCTGAATTATTGATACTGAGCGCCAATTAAATGAAACCCTGCTGGGAAGAGTGCTAAAGCGTGTGTCTGCCGGCAGGTAAACACTACGGGGTGTACAGCTGTGAGGGCTGTAAGGGCTTCTTCAAGAGGACGGTCAGAAAGGACCTGACGTACACTTGCAGAGACAACAAGGACTG[T/A]ATGATCGACAAACGCCAACGCAACCGATGCCAGTACTGCCGCTATCAGAAGTGCTTAGCCATGGGGATGAAGAGAGAAGGTGCGTCCGTTCTTTCTTTCTGCCACATTTAAATAAGAATAAATATGTGGGACAGACAGTGGGACATGCTCTGAAATACACCCATATGAAATACACCCATGCTAAATAGTCATACTTCATTTGGCAAAAAATATTTGAACAAATTGGGTAGATTCCTTGTTAGCAATATTTTCACCTGAAGTTATTGAGTGGTTTATTTTATCTTAAAAGAGTGACTAAGTTTTCTTTAAGTCATCAGAGTAACCTAGTTTGGGCTTGAGTTGTGTTATGGATGAAATATAGGCTAAATTATAAATATTTTTAACACAAAGAACTGACAGATGTAGTTAGAGTTGTATTTTGAAGCTGTAACGTAAATGAAAACACCGGCCAGAAAACTGGAAGCTAAGTGGCACCCTTTCACTTCAGAAAATGTAAGAGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1205
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000016321 Nonsense 111 379 3 9
Genomic Location (Zv9):
Chromosome 5 (position 68078985)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 63820485
GRCz11 5 64501649
KASP Assay ID:
554-1114.1 (used for ordering genotyping assays)
KASP Sequence:
GACTGTATGATCGACAAACGCCAACGCAACCGATGCCAGTACTGCCGCTA[T/A]CAGAAGTGCTTAGCCATGGGGATGAAGAGAGAAGGTGYGTCCGTTCTTTC
Long Flanking Sequence:
CTTGCCCAACACTGGCGAATTTGATGTGCGAAAGAAGCGAGTAAATTCAAAAATGTTCACGTCTATTTATTCGTGTGTGCCATGTCTGGTGTGAACACAGCATTAGTCACTTCGGACAAAAGTGTCTGCTAAATGACTAAATGTAAATCCCCCAAATGACCAATCAGAATCAGTCATTCCATAGTGTCGTTTCCTTATATTGTATTGCATTCAATAAATTTGGTCTCTCCATATGCTCTGCCTCTCATGTAGTATGGGACAAAAACAGATGTGGTGGCTGCTGAATTATTGATACTGAGCGCCAATTAAATGAAACCCTGCTGGGAAGAGTGCTAAAGCGTGTGTCTGCCGGCAGGTAAACACTACGGGGTGTACAGCTGTGAGGGCTGTAAGGGCTTCTTCAAGAGGACGGTCAGAAAGGACCTGACGTACACTTGCAGAGACAACAAGGACTGTATGATCGACAAACGCCAACGCAACCGATGCCAGTACTGCCGCTA[T/A]CAGAAGTGCTTAGCCATGGGGATGAAGAGAGAAGGTGCGTCCGTTCTTTCTTTCTGCCACATTTAAATAAGAATAAATATGTGGGACAGACAGTGGGACATGCTCTGAAATACACCCATATGAAATACACCCATGCTAAATAGTCATACTTCATTTGGCAAAAAATATTTGAACAAATTGGGTAGATTCCTTGTTAGCAATATTTTCACCTGAAGTTATTGAGTGGTTTATTTTATCTTAAAAGAGTGACTAAGTTTTCTTTAAGTCATCAGAGTAACCTAGTTTGGGCTTGAGTTGTGTTATGGATGAAATATAGGCTAAATTATAAATATTTTTAACACAAAGAACTGACAGATGTAGTTAGAGTTGTATTTTGAAGCTGTAACGTAAATGAAAACACCGGCCAGAAAACTGGAAGCTAAGTGGCACCCTTTCACTTCAGAAAATGTAAGAGCTGAGTGATATGACACAATGCATAAATGTGCATTTAACACATATTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11783
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000016321 Essential Splice Site 331 379 9 9
Genomic Location (Zv9):
Chromosome 5 (position 68054132)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 63795632
GRCz11 5 64476796
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTATCAGTGTTGTTTTGCCTAATATTCTCTGTAATATTTAAAAWTCGYGC[A/T]GRTTTGCCAAGCTGCTGCTGCGTCTGCCCGCCCTGCGCTCCATCGGCCTC
Long Flanking Sequence:
TCATCCCACGTGATTATGTACACTTCGTTCTTTCACTGGATGATTACAGCCTACTGAGACTACAAATAGGCGCAGAAGGCCCCTACTGGCCCATATCTGCCACTGATAACGCCCAATCAATTGAATGATTACATTGGAATCTGGTGCTAATTTAGTGATTTTAATTTTTAAGAAACTTACAGATTTACAGTTGAAGGGAGATTTATCAAGGTACTAATAATATTATCCTTAAAATAGTTTTAAAACTGTTTTTATTTTAGCCAAAATAAAACAAATCAGACTTTCTCCAGAAGAAAAAATATTATAGGAAATACTGTGTAAAATTTCCTTGCTCTCTTAAACATCATTGGGGAAATATTTCTAATAATAGAGAGCTAATAATTATGACTTCCACTGTATGTTTATGTTTTTTAACATTCTATAAGTATATTAACATTACATTCATGTTTATTATCAGTGTTGTTTTGCCTAATATTCTCTGTAATATTTAAAAATCGCGC[A/T]GGTTTGCCAAGCTGCTGCTGCGTCTGCCCGCCCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCATCTCTTTTTCTTCAAGTTAATTGGAGACACGCCGATCGACACTTTCCTCATGGAGATGCTGGAGGCGCCGCATCAAATCACATAAACTCCTCATGTACGAAACACACGGCAGGAACATTACGCAATGCGCTAAATACTGTCCAACCCATTCATTACGGAATACCATGCCGGATTAAGTGAGTTTTTCCTGGTTTGCATGCACGTTTGGGAAGTCTCGCAACGTTCTGGAGTTTTTTTTTTTATTTCTTTTGCCTTACAGAGGTCTACCTCTGCTTTCCACAGCCGAACCGCCTCATCTCTGAACTCACAATCATTTTGCTGTGAATGAGAGGACACAAAATACCTCAGATGCACTTCTACATGCAGCTGTCCTTAAAGCGCGCCACTGTGTTGATTTCAGTGGGTACGTTTACATGGTCATGAGTCATCCAATTAT
Associated Phenotype:
Not determined