Busch Lab

ZMP

zgc:92824

Ensembl ID:
ENSDARG00000033143
ZFIN ID:
ZDB-GENE-040718-214
Description:
Transcription elongation factor SPT4 [Source:UniProtKB/Swiss-Prot;Acc:Q6DGQ0]
Human Orthologue:
SUPT4H1
Human Description:
suppressor of Ty 4 homolog 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:11467]
Mouse Orthologue:
Supt4h1
Mouse Description:
suppressor of Ty 4 homolog 1 (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:107416]

Alleles

There are 2 alleles of this gene:

Allele Name Consequence Status Availability
sa40350 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

This allele has been removed from public view.

Allele Name:
sa5277
Status:
Allele not cryopreserved
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
n/a
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000048843 Nonsense 18 117 1 5
Genomic Location (Zv9):
Chromosome 5 (position 3105015)
Other Location(s):
Assembly Chromosome Position
GRCz10 KN150672.1 47630
GRCz11 5 3118942
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTCTCTGGAGACCGTCCCGAAAGACCTGCGCCACCTGAGAGCSTGTTTGT[T/A]GTGCTCTCTCGTTAAGGNNNNNTAACGTTAAATATGACATTGTTTATCAA
Long Flanking Sequence:
TGAGCGCGGGTTGTTTACTGTCATTCTGTTTAAAATGAGTTTTAAAAGAACCCATTTTGCTGTTCTAATTACGACATAGCACGGAATCAATATGTTTTGAGGTTCTATTAATTCCACCATTTTCATTTAAACAATTACATGCGTTATATTCATTACGAAACGCTTATTGTGCGAAGTGTTGTAGCAATGCTTGCACTGAAGGGGTCAAAAATAAAAAATATATAAAATAAAGTATTTTGTTAATAATATGTCAACAATAAAACGTTAAACATAAGTAATAAGCAAAAAACAAAAACACAATCAAACGACGCGTATATGTGACGTCATCAAGCAGCGCCGAACGTGTGGTTGTGGCTAGCAGACGCTAACAGCTAAACAGTCGTTGTTTCGAGGAATTTATAAAGATTGTTGTAATAAATATTACGTGTGTTTGATCAAAGCTTCAGGAATGTCTCTGGAGACCGTCCCGAAAGACCTGCGCCACCTGAGAGCCTGTTTGT[T/A]GTGCTCTCTCGTTAAGGTAAGTTAACGTTAAATATGACATTGTTTATCAATGCAGATGGATTCATCGATATGTTTAAATATTGTAATACTAAAATACAGCAGATACTACACACAAAGGATGGTGTCGGGATTCTAGATAGACGTTTCGTCTTTCTTCAATAATTACCAAAACACACGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATGTATATATATATATATATATGTACATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTGACTGACATATATTTCTTTAACATTATTTACAGAAGACAGACACTGAAATGTCATTAACAATAACAGTAGTTGGTATGTTACACCTGAATGATAATGAAACATTATTTCAGTCGTATTTTACCCATATTTTTCTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa40350
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000048843 Nonsense 70 117 3 5
Genomic Location (Zv9):
Chromosome 5 (position 3107530)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 2791725
GRCz11 5 3121457
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCACGTCTTTTTTGCAGTGTTATTGCTATGATGAGTCCAGAAGACAGCTG[G/A]GTGGCAAAATGGCAGAGGATCGGTGAGTGTTTTATATACAGATTGATTCA
Long Flanking Sequence:
TAAGCTATATTGATGTGTATATCCACAGCTGTATCCCTTCTAGACTTTAACCTCATGCAGCTCTAAACCTGTGCGACCTACTTGTTTTTTTCCCAAGGCTAAAAAATACAGTGTTAGAAAGAATATACAACGTTAGTCTTCTTTAAATGAAACAATATTGTCTTCAAACTAATTTGATGATTTGAAATGCCAAAGTTGAAATCTAGTTTATGCTGGTCCTCTTCAATAATATAATATCCCATAATGTTTATAAGACTGAGGTCAGTTGGCAGAGAAAAGACTGCCTTTTGTGGATGTTTGAATGGATTATTTACTAAATGAGCAACTACATTACAAAAGGAGTCTGTTTTGAAGTGTTTTGGATTTCCTCTTTGGGCATACTGTTCATTTAAAACGCACACACAAATACATGCCTAAAAATAGGTTGGATTTAATTTGATCGTGAATGTGTCACGTCTTTTTTGCAGTGTTATTGCTATGATGAGTCCAGAAGACAGCTG[G/A]GTGGCAAAATGGCAGAGGATCGGTGAGTGTTTTATATACAGATTGATTCAAAAACTGGTATCTTAATGCTTAGAGCAAAGGTGAGATCGTTCAGCTTAATATCCGCTTGTTAAGTTGTGACGTGTTTGTGACGTATGTAATACTGTTTCGGGTCCTAGCCGCCATTCATTTGAGTGAAGAAATCATTTGTTTATAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATTAATTTTTTTCGATATTACCGTAGTCGCATGACTCGGTAAAACTATAGGTCTTCTAAGAAAATTTGCTCAGGCGAATGAAGCGAACGGGAGGTAGCAAAAACTACAATTCCCATCAGCCCAGGGGTGGCCATCACCTTGTCGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGAAGCTGGGATAAAAAAGAGCTGGAAATGATCGAACCTAAAGCGGGTGTTGTCGCCGCGCGCGTACTGAATAGCGGTGTTGTCGC
Associated Phenotype:
Not determined