Busch Lab

ZMP

clcn6

Ensembl ID:
ENSDARG00000032577
ZFIN ID:
ZDB-GENE-030131-2056
Human Orthologue:
CLCN6
Human Description:
chloride channel 6 [Source:HGNC Symbol;Acc:2024]
Mouse Orthologue:
Clcn6
Mouse Description:
chloride channel 6 Gene [Source:MGI Symbol;Acc:MGI:1347049]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa16118 Nonsense Available for shipment Available now
sa2420 Nonsense F2 line generated Not yet available
sa5777 Nonsense F2 line generated Not yet available

Mutation Details

Allele Name:
sa16118
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047134 Nonsense 816 863 22 23
Genomic Location (Zv9):
Chromosome 8 (position 50792388)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 48644798
GRCz11 8 48633567
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCTACATGAACCCCTGYCCRTATACAGTCTCTCCAAACACACAYGTCTCC[C/T]AAGTATTCAATCTTTTCAGRACTATGGGGCTTCGACACTTACCTGTAGTC
Long Flanking Sequence:
AATATTGCAGATACCATTATCACAATATCGCTAATTCTTTAATATATTGTGCAGCTCTAAATTTCCATATTCTCCCTTTCCACAGAGTGCCTCACAGCCACGGCTCTCTCACTCAGAGATGACTGAGGATTACCCACGATTCCCTGACATCCACGATCTCGACCTGGCCCTTCTCAACCCACGCATGATTGTGGTAACGTCCTCTGACCTGTCAAACTCTTTATGGCGTGACGCAACAGTTCATAATCTACTGTTAATGTCGTTTAAAAATGATGTGTTCTTGTGTGTGTGTCTATAATGAGTCTTAATTGGAGTTAATCAGAATTGTTGAAGTGCTCTTGTAGCAAAGTGAACCATGCAGAGGTGACAGTTTCTTCAGTGGTCTCTCTCAGACATAATTAGCTTGATTTCTCTCTCTTCCTTTATTTATTTATTTACAGGATGTGACGCCCTACATGAACCCCTGCCCGTATACAGTCTCTCCAAACACACATGTCTCC[C/T]AAGTATTCAATCTTTTCAGGACTATGGGGCTTCGACACTTACCTGTAGTCAATGCAGTAGGAGAGGTAAGTCAAGTCAAGTGCGACATAAATAAATATAATCATAGATATGAACATGAACTGGACGTAAGAGCTATTTAAAACGTATATATACAACAGAGTATTAATCTGACTACATTAACTACTAACTGCAAATACTATAATGCAGTGGTTCTCAAACTTTTTTCACCAGGTCCACCTCAGAAAAAAAAATTCTCTCCAAGTACCACCATAATAACCAGTATTGAAATACAGTTGTATTGTTGGGCTAATTAAGCAGCTACAGCTTTGCGCAGCTCAAAAATGAGGCAAATTAATCCCTATTATTAAGAATATGTATAATTGACAGCCACTTTAAACATTATAAATAGTTTAAACATTAAGGGCTCTATTTTGACGGTCCATGCACAGAGCGCAAAACGCAGGGCGCAAACGCTCTCAGGGTGTGTCAGAACGCATTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa2420
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047134 Nonsense 858 863 23 23
ENSDART00000047134 Nonsense 858 863 23 23
Genomic Location (Zv9):
Chromosome 8 (position 50788804)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 48641214
GRCz11 8 48629983
KASP Assay ID:
554-2626.1 (used for ordering genotyping assays)
KASP Sequence:
TAATCACCAGGCATAATCTTACCCATGAGTTTTTAGTCGCTAAACTCCGA[C/T]AGCATTACATCACRATATAAGACTCCACTGGCACCGTCTGCCATCAAACA
Long Flanking Sequence:
ACAGGTGGTTTGTCAAGCCCACTCACCGGTGTGAGGCACACTCAGATATGCACAATCGAGTTCGATTCCCGGCTCGGGGTCCTTTACCGATCCTTTCCCTCTCTCTGCTCCCTATGCTTTCCTGTCTGACATCTTCACTGTCCTATATCATAATAATGGTGAAAACCCTTAAAATATTTAATAAAACAAGAGACAAAATTCACTTAAATTTTCTATTTAGTTTAAATGTAAAATGTAGTTAATCGAAAATGTAAAAAAAAAATCAATTTTGAGAGGCAGTAAAATGCTTACATGAGCACCAGTGACCTAAATACAAAAGACTATCAGTAATAAGTAAATTACAGAATAAAATAATAAATAAAATAAAGAAGAATTTCGATATAGAAATCAGAGCTATAGAAAAAAAAACAAAATTTTAAATGTGCATCTTTCTTTTTCAGATTGTGGGAATAATCACCAGGCATAATCTTACCCATGAGTTTTTAGTCGCTAAACTCCGA[C/T]AGCATTACATCACAATATAAGACTCCACTGGCACCGTCTGCCATCAAACAGCCAAGCTTAAGTAATGGCTGACTGGAGATGAGATGAGGAAGACTCCAGAGACCTGAGACCATCCTCCCAAGACCACCATCAGACCTGAACAGTGTCTTCAGGTCCAATCCTTAAGCCATTCCTTGTCACCGTGTGGACTGCTAGCTGGAGTGCCTGACCCGTCCAGGAACACACACAAATACACAAACACATAACACTAATGCAGGTAAGGTACAGTTAATCCACACATGTTCAGTACAGCGTACTGATTTTTTTTCTTCTGACGCTGCCTGCGCTTTACCAACCTCACTTAAGCACTTTTAATTTTGACTTCTCAGTTTTAAATTCGTGGACCATTTGCTTTTGCACAAAGAATGAGGTAAACCACTGACCACAGTCGCTGATCAAATTATTGTTCCTTTTTTTGTTTTCCGAAGAAGTAAAACGTTTTAAATCCATGCTACTTGTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa5777
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000047134 Nonsense 858 863 23 23
ENSDART00000047134 Nonsense 858 863 23 23
Genomic Location (Zv9):
Chromosome 8 (position 50788804)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 48641214
GRCz11 8 48629983
KASP Assay ID:
554-2626.1 (used for ordering genotyping assays)
KASP Sequence:
TAATCACCAGGCATAATCTTACCCATGAGTTTTTAGTCGCTAAACTCCGA[C/T]AGCATTACATCACRATATAAGACTCCACTGGCACCGTCTGCCATCAAACA
Long Flanking Sequence:
ACAGGTGGTTTGTCAAGCCCACTCACCGGTGTGAGGCACACTCAGATATGCACAATCGAGTTCGATTCCCGGCTCGGGGTCCTTTACCGATCCTTTCCCTCTCTCTGCTCCCTATGCTTTCCTGTCTGACATCTTCACTGTCCTATATCATAATAATGGTGAAAACCCTTAAAATATTTAATAAAACAAGAGACAAAATTCACTTAAATTTTCTATTTAGTTTAAATGTAAAATGTAGTTAATCGAAAATGTAAAAAAAAAATCAATTTTGAGAGGCAGTAAAATGCTTACATGAGCACCAGTGACCTAAATACAAAAGACTATCAGTAATAAGTAAATTACAGAATAAAATAATAAATAAAATAAAGAAGAATTTCGATATAGAAATCAGAGCTATAGAAAAAAAAACAAAATTTTAAATGTGCATCTTTCTTTTTCAGATTGTGGGAATAATCACCAGGCATAATCTTACCCATGAGTTTTTAGTCGCTAAACTCCGA[C/T]AGCATTACATCACAATATAAGACTCCACTGGCACCGTCTGCCATCAAACAGCCAAGCTTAAGTAATGGCTGACTGGAGATGAGATGAGGAAGACTCCAGAGACCTGAGACCATCCTCCCAAGACCACCATCAGACCTGAACAGTGTCTTCAGGTCCAATCCTTAAGCCATTCCTTGTCACCGTGTGGACTGCTAGCTGGAGTGCCTGACCCGTCCAGGAACACACACAAATACACAAACACATAACACTAATGCAGGTAAGGTACAGTTAATCCACACATGTTCAGTACAGCGTACTGATTTTTTTTCTTCTGACGCTGCCTGCGCTTTACCAACCTCACTTAAGCACTTTTAATTTTGACTTCTCAGTTTTAAATTCGTGGACCATTTGCTTTTGCACAAAGAATGAGGTAAACCACTGACCACAGTCGCTGATCAAATTATTGTTCCTTTTTTTGTTTTCCGAAGAAGTAAAACGTTTTAAATCCATGCTACTTGTTT
Associated Phenotype:
Not determined