ZMP
clstn1
Ensembl ID:
ZFIN ID:
Description:
calsyntenin 1 [Source:RefSeq peptide;Acc:NP_001071252]
Human Orthologue:
CLSTN1
Human Description:
calsyntenin 1 [Source:HGNC Symbol;Acc:17447]
Mouse Orthologue:
Clstn1
Mouse Description:
calsyntenin 1 Gene [Source:MGI Symbol;Acc:MGI:1929895]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa16000 | Essential Splice Site | Available for shipment | Available now |
| sa14307 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa16000
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000049985 | Essential Splice Site | 28 | 317 | None | 10 |
| ENSDART00000059339 | Essential Splice Site | 28 | 964 | None | 18 |
| ENSDART00000129248 | Essential Splice Site | 28 | 971 | None | 18 |
| ENSDART00000130780 | Essential Splice Site | 28 | 317 | None | 13 |
| ENSDART00000133902 | Essential Splice Site | 28 | 954 | None | 17 |
Genomic Location (Zv9):
Chromosome 23 (position 29910353)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 23 | 29740920 |
| GRCz11 | 23 | 29667461 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCAGTCGGTCTGCTTTTAGGACTATTATACGCGGTGGAKKCAGCCAAAGG[T/A]AAGATTTAAGAGCGTTTTGATCCATTGCCAGTGACAARATGTGAATATAA
Long Flanking Sequence:
AAAATTCATTTTGATATTGAATTGTCAAAAGATGGTTTAAAACATCACACAACATCATTTTACACGTGCAAAAACTATCCACCCCGCATCTTTTCAATCCACACCCTCTCTGAAAGTCTGAGGTTGCCTATGGAAAGCGGCCCGCACTCAGTCCCACAATAACACGCGTGACGTCAGCCCGTCACCGCTCCCGTTGGATGCAGCAGTAGCGGAGCGGCGAGAGACACTGAACGGTGATTGAAAGAGAAGAGAGCTGAACGGCGGTGGCGGCGGCAGCCATCTTAAAACTACCGCACTAATCCGAGATATACATCTTCTGGATATTTCTGCGACGCCGAGCCCAATCAGACCGTTTCGGGCGAGAGGAGACAGAGTAACGCAGTTTTAATCTTTCCCTGTTTTTATTACGAAGACGCGATGCGGATCCGCGGGGTCAAACCTTTCGCTTCTGCAGTCGGTCTGCTTTTAGGACTATTATACGCGGTGGATGCAGCCAAAGG[T/A]AAGATTTAAGAGCGTTTTGATCCATTGCCAGTGACAAGATGTGAATATAATGTGAATAAGTTCCACCGTTTAACATATCTCAAGCTTGCGAATGTATTATTGTAATTTATTTTTAAGCTTATTATTGTTCCTCGATCAGTCTTTCTTAGCAGTAATCTAAAATAATGGCTTAAAATCAAGGTGTGAGTAATGCGTCCAACATGTAGGCTATCGCAGCCTATGAAAAATCCATCTCCGTCTCATACCGAAAAGCTGTCATGAAATAATTGCCGTGGCCTGTCAGCTGTGAAATCTCCCTCACGGTTCCGCTTCAATTGACAGCTATTTTTTAGTGTCAATCCTTTAACATAACAGTCTTGTCTGTGCCAACACCCCGTGGCCAGGACACATCACAGCGTTTTGCTTGGGAATCAAATCTGTGTGCTTGGTTTGTACTCCCGTTTTAAAGGCAGCGCGGGAGGTGTCGTGCGAGAACATAACTTGGTTTTGGTTTGTATTCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa14307
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000049985 | Nonsense | 176 | 317 | 5 | 10 |
| ENSDART00000059339 | Nonsense | 176 | 964 | 5 | 18 |
| ENSDART00000129248 | Nonsense | 166 | 971 | 4 | 18 |
| ENSDART00000130780 | Nonsense | 176 | 317 | 5 | 13 |
| ENSDART00000133902 | Nonsense | 166 | 954 | 4 | 17 |
Genomic Location (Zv9):
Chromosome 23 (position 29855541)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 23 | 29686108 |
| GRCz11 | 23 | 29612649 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTGTTCAAAGAGAAGTCCTACAAAGCCACAGTAATCGAGGGCAAGAAGTA[C/A]GACAGCATCATGAAGGTGGAGGCCGTGGAYGCAGACTGCTCTTTCCAGTT
Long Flanking Sequence:
ATAAAAAGAAAATTAGCACACTGCCACTTTAGCTCTCACTTTAGCTTTTTTAATGTGACAACATTTCGACCTACATTGTCTTCATCAGGTTAGACTAACCACTGTATATGCATGTTTCCCAGTACTGGGTTGCAGCTAGAAGGGCATTAGCTGTGTAAAGCATATGCTGGATAAATTGGCGGTTCATTCTGCTGTGGCGACTACTCACAAATAAAGGGACTAAGCCAAAGGAAAGTGAATGAATGAATGATTTATTTATTTATTTAGTTTTGACACTTGCTAGCCTTTAGATCATGTGTAAATGAATCATCCATCTGCTAACAGACAGGATCTGCGTCACTGCCGTGTGCTTATTTCCTCGCGTCCACTTCTAGTTTATTAATCAAGTCTTTGATGTCCCTCAGGGCCACCGTCCACATCCAAGTGAATGACGTGAACGAGTACTCTCCAGTGTTCAAAGAGAAGTCCTACAAAGCCACAGTAATCGAGGGCAAGAAGTA[C/A]GACAGCATCATGAAGGTGGAGGCCGTGGACGCAGACTGCTCTTTCCAGTTCAGTCAGATCTGCAGCTACGAGATTGTCACCCCCGATGTGCCCTTCACCATTGATAAGGATGGTAAGTGACTGCCAAAACTCAGCTCTAACAGCAATATTGACTTCTAGGTCATTGTTATTCATGCGCATATAAAAAATTGATTTGTTCAAACAAGCCGTAGCACTCTAATGTTGACGTTAGCCATCTGTCACCTTGAGATGTGGCCGGAATTTAAAGACTCCCTGAAGTGCTTTGGAAAGCTATGTGTGATGTAATTTCAGCTGAAACGTGATTACAGGGTGGGTTATATTAAGTAGCTCCTCCCATGTTTTAAAATAGCCAATAGCGCTTTGTTTATATTGCAGATCTGAGTGTTATAGCAATGGTGAGTTTGTATAATTGTTTCCTTGCTTTATAATACAGGGTACAGTGTTGAGTTCTATTGGGTCTAAGGGTGTCACGATCCTCC
Associated Phenotype:
Not determined