ZMP
lrrc42
Ensembl ID:
ZFIN ID:
Description:
Leucine-rich repeat-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q6P5J6]
Human Orthologue:
LRRC42
Human Description:
leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:28792]
Mouse Orthologue:
Lrrc42
Mouse Description:
leucine rich repeat containing 42 Gene [Source:MGI Symbol;Acc:MGI:1925059]
Alleles
There are 2 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa18299 | Essential Splice Site | Available for shipment | Available now |
sa15849 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa18299
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000045056 | Essential Splice Site | 323 | 407 | 6 | 7 |
Genomic Location (Zv9):
Chromosome 2 (position 26758067)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 26954263 |
GRCz11 | 2 | 26609897 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAAGTGCCAAAGAAWGACCCCAAAYCAAGAACAAATGCCCTTCGTTTCTG[T/C]AAGTTTATTCATATTATTTATTATATTTGACTTTATATATTTAATATTAT
Long Flanking Sequence:
ATTTGGTTTTTATGCAATTGTATTCTAATTTACACACTTGTGTTTCTGTTGATTAGAGAATCACATCACTGAGAAAGGGCTCAGATATCTAACATGCTTTAAAACACTACAGAAACTAGACCTATCTGGAACAAAAGTGATGGTAAGACATTGAAAAAGAGAACCTCATTGACACTGAATGGGCTGTTGACGTTTTCCTAAAGGTCTTCTATGATCATGTCTTGCAGATGGACGTGTCCTTGAAAGGTTTCTTCCGGATGATGGGAATGGCCCTCTCTGAGACTCCTCTGATGGACTTCACACACACTGCCTGCAAAACAGAAGGCTGGGCTGAACAGGTAACAAATGCATCGTTTTATAGTGTTGCTGTTGTAGAGGTTTACACTGGGCTCTTGTGTCACTGTTTACATCTTTAACCAGGTAATAAACCAATGGGAAATCACAGCAGCAGAAGTGCCAAAGAAAGACCCCAAACCAAGAACAAATGCCCTTCGTTTCTG[T/C]AAGTTTATTCATATTATTTATTATATTTGACTTTATATATTTAATATTATATTTATTTCATTTACCCATCCATCCATCTGTCTATTTATCTATCTGTCTGTCTGTCTGTCCGTCCATCTGTCTATCTATCTATCATCTATGCATCCATCTGATTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGTCCGTCCGTTCATCTATCCATCCATCCATCTGATAGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCGTCCGTCCTTCCGTCCATCTATCTGTCTGTCTGTCCAAAATACCATAGCAACACTAGCAATCACCCATAATCTCATAACTGGTTAGCGGTCACATAGAATAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15849
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000045056 | Nonsense | 336 | 407 | 7 | 7 |
Genomic Location (Zv9):
Chromosome 2 (position 26758871)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 2 | 26955067 |
GRCz11 | 2 | 26610701 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGTTTTTTAGATGGAAGAGAAAAGTTYGTCAGAGARATGTTAAACTCCTG[G/A]TCTGAAACAAGTGACGCCACAAACAAAGATAAAGCTGTGCCCATTCACTT
Long Flanking Sequence:
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCGTCCGTCCTTCCGTCCATCTATCTGTCTGTCTGTCCAAAATACCATAGCAACACTAGCAATCACCCATAATCTCATAACTGGTTAGCGGTCACATAGAATATCCTAACAACCACATGGCAGTCAGTTTGAACTCATTTAGTCATTTAGCAGACGCTTTTATCTAAAGCAACTTACAAATGAGGACAAGGAAGCAATTTACACAACTATAAGAGCAACAATGAATAAGTGCTGTAGGCAAGTTTCAGGTGTGTAAAGTGTAAGAGGCAAAGCATTAGTAATATAATTTTTTTCCCAATGTTCAGGCTAGGCAACATTAAAGTTTGCCCTTCATATGGTTTTTTCCTTTTTTTTTCTTGTTTTTTAGATGGAAGAGAAAAGTTTGTCAGAGAGATGTTAAACTCCTG[G/A]TCTGAAACAAGTGACGCCACAAACAAAGATAAAGCTGTGCCCATTCACTTTTGTAAGGTTGATGATTGTGTGCAGAGTTCACCTTCAGGGGAGACACATTCAACACACAAGAGCAGGAAGAGGAGACTGTCAACAGAGGAAGAGCAAAGTGCAGCTCCAGTGGCAAAGCGTCTGCCTCTGTCTGTGGAAGATTTACATCTGCTGAATAGTTACTGAGTGGAAACACACAGTCATGGGATGTTTCTGCAGCGCTGTCCTCTGTGAGGAAGGTGACACTGATGTGCTTTTAGATTAGATCATTTACTATTAAAAACGGCTGCTTTATTTTTGTACATAAGTCTGCATTTCTTCAAGCATGTTCAGTTGATGCCAAATATGGATTTATGGGAAATAGTTTTGGCTTATAGCCATGGGTGTAAAAATGTACATGGTTTAATTCATTAAATGGTGCTTCCATGATACTTAAAACTAATTAAGAGTTGAAATTTTAAAGCTATATG
Associated Phenotype:
Not determined