Busch Lab

ZMP

pcdh17

Ensembl ID:
ENSDARG00000027041
ZFIN ID:
ZDB-GENE-090608-3
Description:
Protocadherin-17 [Source:UniProtKB/TrEMBL;Acc:C4P342]
Human Orthologue:
PCDH17
Human Description:
protocadherin 17 [Source:HGNC Symbol;Acc:14267]
Mouse Orthologue:
Pcdh17
Mouse Description:
protocadherin 17 Gene [Source:MGI Symbol;Acc:MGI:2684924]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa38852 Nonsense Mutation detected in F1 DNA Not yet available
sa41877 Nonsense Mutation detected in F1 DNA Not yet available
sa41876 Nonsense Mutation detected in F1 DNA Not yet available
sa16710 Nonsense Available for shipment Available now
sa11699 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa38852
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125630 Nonsense 267 1137 1 4
Genomic Location (Zv9):
Chromosome 11 (position 33534703)
Other Location(s):
Assembly Chromosome Position
GRCz10 11 32458751
GRCz11 11 32721563
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGTAATAATAGATTTAAATGCTACAGATTCTGATGAAGGGATTAATGGG[C/T]AGGTTACTTATTCTTTTAGCTGTTATGTCCCAGACAGGATCAAAGAGTTG
Long Flanking Sequence:
CCAACGACAAGGAGATCTGCATGATTAAAGTTGAGATACAGGACATAAATGACAATGCACCGAGCTTTCCTTCTGAACAAATCGATATTGACATATCTGAGAATGCAGCCCCAGGCACACGTTTCCCCTTGGCTGCTGCCTACGACCCTGACACTAAGGAAAACGGCCTGAAAACATATCAGATCACTCGGGACGATTACAGTATATTTTCTTTGGATGTCAAATCCAGAGGGGATGGAACTAAATTCCCTGAACTGGTCGTTCAGAGGTCTTTGGATCGAGAGGAACGTAGCCATCATACTTTAATTATAACCGCCACAGATGGAGGGGAATACCCCAAATCAGGCACAATGCAAATCAATGTAAAAGTCACTGATTCCAATGACAACAGCCCTGTGTTTGAACAGCCCTCATATGTAGTGGAGATTCCTGAGAATGCACCGCTAGGCACAGTAATAATAGATTTAAATGCTACAGATTCTGATGAAGGGATTAATGGG[C/T]AGGTTACTTATTCTTTTAGCTGTTATGTCCCAGACAGGATCAAAGAGTTGTTTTCAATAGACCCACGAACTGGTGTCATAAAGATTCAGGGTAAAATCGACTTTGAGGAGAACCCAATTATAGAGATTGATGTTCAGGCAAAGGATCAAGGACCCAACCCAATTCCTGGCCATTGTAAAGTCACTGTTAAAGTGCTTGACAGGAATGACAACTGGCCGTCAATAGGTTTTGTAGCGGTGCGTCAGGGGGCGGTTAGTGAAGCAGCAACTCCAGGGACAGTGATTGCACTCGTGAGAGTCACAGACAAAGACTCTGGCCGCAATGGGCAGCTCCAGTGTAGGATTTTGGGCAATGTTCCTTTCAAGCTGGAGGAGAACTATGATAACTTTTACACTGTAGTGACTGACAGACCCCTGGATAGGGAGGTAAAAGATGAATATAACATCACTATTGTGGCCAAAGACAATGGCAATCCACCCCTAAACTCAACAAAGTCTTTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41877
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125630 Nonsense 283 1137 1 4
Genomic Location (Zv9):
Chromosome 11 (position 33534654)
Other Location(s):
Assembly Chromosome Position
GRCz10 11 32458702
GRCz11 11 32721514
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCAGGTTACTTATTCTTTTAGCTGTTATGTCCCAGACAGGATCAAAGAGT[T/A]GTTTTCAATAGACCCACGAACTGGTGTCATAAAGATTCAGGGTAAAATCG
Long Flanking Sequence:
TGACAATGCACCGAGCTTTCCTTCTGAACAAATCGATATTGACATATCTGAGAATGCAGCCCCAGGCACACGTTTCCCCTTGGCTGCTGCCTACGACCCTGACACTAAGGAAAACGGCCTGAAAACATATCAGATCACTCGGGACGATTACAGTATATTTTCTTTGGATGTCAAATCCAGAGGGGATGGAACTAAATTCCCTGAACTGGTCGTTCAGAGGTCTTTGGATCGAGAGGAACGTAGCCATCATACTTTAATTATAACCGCCACAGATGGAGGGGAATACCCCAAATCAGGCACAATGCAAATCAATGTAAAAGTCACTGATTCCAATGACAACAGCCCTGTGTTTGAACAGCCCTCATATGTAGTGGAGATTCCTGAGAATGCACCGCTAGGCACAGTAATAATAGATTTAAATGCTACAGATTCTGATGAAGGGATTAATGGGCAGGTTACTTATTCTTTTAGCTGTTATGTCCCAGACAGGATCAAAGAGT[T/A]GTTTTCAATAGACCCACGAACTGGTGTCATAAAGATTCAGGGTAAAATCGACTTTGAGGAGAACCCAATTATAGAGATTGATGTTCAGGCAAAGGATCAAGGACCCAACCCAATTCCTGGCCATTGTAAAGTCACTGTTAAAGTGCTTGACAGGAATGACAACTGGCCGTCAATAGGTTTTGTAGCGGTGCGTCAGGGGGCGGTTAGTGAAGCAGCAACTCCAGGGACAGTGATTGCACTCGTGAGAGTCACAGACAAAGACTCTGGCCGCAATGGGCAGCTCCAGTGTAGGATTTTGGGCAATGTTCCTTTCAAGCTGGAGGAGAACTATGATAACTTTTACACTGTAGTGACTGACAGACCCCTGGATAGGGAGGTAAAAGATGAATATAACATCACTATTGTGGCCAAAGACAATGGCAATCCACCCCTAAACTCAACAAAGTCTTTCACTGTAAAGATTTTAGATGAAAACGACAACGCACCACGCTTCACAAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41876
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125630 Nonsense 842 1137 2 4
Genomic Location (Zv9):
Chromosome 11 (position 33467871)
Other Location(s):
Assembly Chromosome Position
GRCz10 11 32391919
GRCz11 11 32654731
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTCACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGG[C/T]AGCAGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATT
Long Flanking Sequence:
AAATAAATACAATTAGCTTCTATTAAGAACAATAGTTGTGAATGGGATGCTCCCCGATGGATAGAGAAGGTTGTGTGTGTGGGTGAACGTTCAGAGCCTTTAACAACTTCAGCAAATCTTCTCATTTTCTTACACCACACACACACACACTCCCTCTTATTCGCTCCATTTTTTTTTCTTCTGCCGTGCTCCTCCACTCGTATTCGTATCTAACAGGTCATTAAGTTCACAAATGTGCAATTGAGTGTTTTGGATGTTTAATTAGCATGTTTCCTTGACTAATTAAAATGCACAAATCTACGGATTAAAGCTCCCCTCCTTTTCTCCATCTCTTCCACCACCCCCCCTCCTTTTTATGAATAATTAATCAATCTCTTTCACCAGGAGATTCTGTCGCACACCAGGACACATTTCAGTGTCGCGCAAGACGTAAACTCTTTTCCTTTTCCCCTTCACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGG[C/T]AGCAGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGTTTTTTTACACACAGACGTTCTTCAGATAAGAGCTAAGAAGCCATGCCAGGGTTAATCTGTTTGATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCTCAACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGGACAGCGACCAAGCGGACAGCGATCAGGACACTAATAAAGGCTCCTGCTGTGACATGTCTGCTAAAGAAGCGCTCAAGATGAAGGCCACTGGACTCAAGCCTCAGCCACTTGAACAGGGTGAGTCCTTCAACATGAGCAACTTTAATAGTCTGTGCGCTATCACAGTCTTTTCTTTCGCCTTTTGCTCTTTGTTACTGGACGTCCTACAGTACGTGTCTGTTGCTTTATTCTAGTGTTAAGCTGTCTTCACAAGGCATGTTTCACAAATGCAGAAGACTTTTGCG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16710
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125630 Nonsense 843 1137 2 4
Genomic Location (Zv9):
Chromosome 11 (position 33467868)
Other Location(s):
Assembly Chromosome Position
GRCz10 11 32391916
GRCz11 11 32654728
KASP Assay ID:
2260-4482.1 (used for ordering genotyping assays)
KASP Sequence:
CACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGGCAG[C/T]AGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGT
Long Flanking Sequence:
TAAATACAATTAGCTTCTATTAAGAACAATAGTTGTGAATGGGATGCTCCCCGATGGATAGAGAAGGTTGTGTGTGTGGGTGAACGTTCAGAGCCTTTAACAACTTCAGCAAATCTTCTCATTTTCTTACACCACACACACACACACTCCCTCTTATTCGCTCCATTTTTTTTTCTTCTGCCGTGCTCCTCCACTCGTATTCGTATCTAACAGGTCATTAAGTTCACAAATGTGCAATTGAGTGTTTTGGATGTTTAATTAGCATGTTTCCTTGACTAATTAAAATGCACAAATCTACGGATTAAAGCTCCCCTCCTTTTCTCCATCTCTTCCACCACCCCCCCTCCTTTTTATGAATAATTAATCAATCTCTTTCACCAGGAGATTCTGTCGCACACCAGGACACATTTCAGTGTCGCGCAAGACGTAAACTCTTTTCCTTTTCCCCTTCACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGGCAG[C/T]AGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGTTTTTTTACACACAGACGTTCTTCAGATAAGAGCTAAGAAGCCATGCCAGGGTTAATCTGTTTGATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCTCAACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGGACAGCGACCAAGCGGACAGCGATCAGGACACTAATAAAGGCTCCTGCTGTGACATGTCTGCTAAAGAAGCGCTCAAGATGAAGGCCACTGGACTCAAGCCTCAGCCACTTGAACAGGGTGAGTCCTTCAACATGAGCAACTTTAATAGTCTGTGCGCTATCACAGTCTTTTCTTTCGCCTTTTGCTCTTTGTTACTGGACGTCCTACAGTACGTGTCTGTTGCTTTATTCTAGTGTTAAGCTGTCTTCACAAGGCATGTTTCACAAATGCAGAAGACTTTTGCGTCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11699
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000125630 Nonsense 849 1137 3 4
Genomic Location (Zv9):
Chromosome 11 (position 33467705)
Other Location(s):
Assembly Chromosome Position
GRCz10 11 32391753
GRCz11 11 32654565
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCT[C/A]AACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGG
Long Flanking Sequence:
CATTTTTTTTTCTTCTGCCGTGCTCCTCCACTCGTATTCGTATCTAACAGGTCATTAAGTTCACAAATGTGCAATTGAGTGTTTTGGATGTTTAATTAGCATGTTTCCTTGACTAATTAAAATGCACAAATCTACGGATTAAAGCTCCCCTCCTTTTCTCCATCTCTTCCACCACCCCCCCTCCTTTTTATGAATAATTAATCAATCTCTTTCACCAGGAGATTCTGTCGCACACCAGGACACATTTCAGTGTCGCGCAAGACGTAAACTCTTTTCCTTTTCCCCTTCACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGGCAGCAGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGTTTTTTTACACACAGACGTTCTTCAGATAAGAGCTAAGAAGCCATGCCAGGGTTAATCTGTTTGATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCT[C/A]AACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGGACAGCGACCAAGCGGACAGCGATCAGGACACTAATAAAGGCTCCTGCTGTGACATGTCTGCTAAAGAAGCGCTCAAGATGAAGGCCACTGGACTCAAGCCTCAGCCACTTGAACAGGGTGAGTCCTTCAACATGAGCAACTTTAATAGTCTGTGCGCTATCACAGTCTTTTCTTTCGCCTTTTGCTCTTTGTTACTGGACGTCCTACAGTACGTGTCTGTTGCTTTATTCTAGTGTTAAGCTGTCTTCACAAGGCATGTTTCACAAATGCAGAAGACTTTTGCGTCTCAGGCTGTTCACATAAGATAAAATCTTGATTTTGTATTAATTTCTTTTGGTCTGTTCCACCTTTTTGCCCTTCTTGACTGTTTCCAACAATTAATATCATATATGGGTCAATGACAAGGCGTCCCATTTTGGTGTCCGCATTAAATTATATTTAGAAAAGTGA
Associated Phenotype:
Not determined