Busch Lab

ZMP

sdf2

Ensembl ID:
ENSDARG00000024026
ZFIN ID:
ZDB-GENE-030131-8823
Description:
stromal cell-derived factor 2 [Source:RefSeq peptide;Acc:NP_956333]
Human Orthologue:
SDF2
Human Description:
stromal cell-derived factor 2 [Source:HGNC Symbol;Acc:10675]
Mouse Orthologue:
Sdf2
Mouse Description:
stromal cell derived factor 2 Gene [Source:MGI Symbol;Acc:MGI:108019]

Alleles

There are 2 alleles of this gene:

Allele Name Consequence Status Availability
sa43657 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa132 Nonsense F2 line generated Not yet available

Mutation Details

Allele Name:
sa43657
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000034875 Essential Splice Site 59 222 2 3
Genomic Location (Zv9):
Chromosome 21 (position 25419781)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 25989599
GRCz11 21 26026294
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTCACATAAATTAATTAATATAAATGTGTTATTATGATTTTGTAATTGC[A/T]GGTAGTGGTCAGCAGTCAGTGACAGGTGTGACCACAGTGGAGGACAGTAA
Long Flanking Sequence:
GGACTGATCACCCCAGTGAATCTAATTTAATAGATTAGTAGATATTTTCCAAATAGACCTATTTAAATCAACAGGTGAAATTATATTCATATTGCAATATATATTGCATCAAAGCAAAATATCGCAATGTTTCAATACCGTGCACCTCTGGCCTACAATGCATAATCGCTTGCAAAAAAAAATTGAAAACATACAGTGGACAACTGCAGAAAATGAGAAAACAGCAAGGAAACATTTACATCCTTCTTTTCCTAACATCATTGTCAGGTTGCAATTCTGAAGAAATCCATATTCTAACTTATTTTCTTATTGGGCTAGTAATGGAAACACAAAAAAGCAGTTATTGGCTGATTGATAAACCGATATGGTCACTGATGTATTAATCATCTCTAATAGAATTCTTCTATAATAAAGTAAAATTCTGTTTTTAATTGCCTTAATGCATCCTTGCTTCACATAAATTAATTAATATAAATGTGTTATTATGATTTTGTAATTGC[A/T]GGTAGTGGTCAGCAGTCAGTGACAGGTGTGACCACAGTGGAGGACAGTAACAGTTACTGGAGTGTTCGGGGCACCAGTGATCACTCATGTCATCGAGGGACTCCTGTACGTTGTGGACAAAATATCCGACTGACCCATGTGAACACAGGCCGCAATCTACACAGCCACTACTTCACCTCTCCGCTTTCTTCAAATCAGGTTTTAATATCTCCATTAACACATATCTAAATCAAATATTTATATGTGAAGCACTGTATGAAAAGCTACATAAGTATTGCATTACATAAGTTGTCATTAGTCAGTCATGAACATGATTGTCGTGAGGCCTTTAAAATTGTATCATGAATATTTTCCTGATTAAATCTTTCTTTTTTATAACAGTTTTTTAAAATACAAATATGTCAAAATAATTTTTAATAGTGCCAGTAATGGGCTAATGACAGATGATTACAGTTGCCATAAATGAAACTCTCTGTGTTTGATTTTCTTTTTTATACACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa132
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000034875 Nonsense 90 222 2 3
Genomic Location (Zv9):
Chromosome 21 (position 25419687)
Other Location(s):
Assembly Chromosome Position
GRCz10 21 25989505
GRCz11 21 26026200
KASP Assay ID:
554-0862.1 (used for ordering genotyping assays)
KASP Sequence:
ACAGTAACAGTTACTGGAGTGTTCGGGGCACCAGTGATCACTCATGTCAT[C/T]GAGGGACTCCTGTACGTTGTGGACAAAATATCCGACTGACCCATGTGAAC
Long Flanking Sequence:
CAATATATATTGCATCAAAGCAAAATATCGCAATGTTTCAATACCGTGCACCTCTGGCCTACAATGCATAATCGCTTGCAAAAAAAAATTGAAAACATACAGTGGACAACTGCAGAAAATGAGAAAACAGCAAGGAAACATTTACATCCTTCTTTTCCTAACATCATTGTCAGGTTGCAATTCTGAAGAAATCCATATTCTAACTTATTTTCTTATTGGGCTAGTAATGGAAACACAAAAAAGCAGTTATTGGCTGATTGATAAACCGATATGGTCACTGATGTATTAATCATCTCTAATAGAATTCTTCTATAATAAAGTAAAATTCTGTTTTTAATTGCCTTAATGCATCCTTGCTTCACATAAATTAATTAATATAAATGTGTTATTATGATTTTGTAATTGCAGGTAGTGGTCAGCAGTCAGTGACAGGTGTGACCACAGTGGAGGACAGTAACAGTTACTGGAGTGTTCGGGGCACCAGTGATCACTCATGTCAT[C/T]GAGGGACTCCTGTACGTTGTGGACAAAATATCCGACTGACCCATGTGAACACAGGCCGCAATCTACACAGCCACTACTTCACCTCTCCGCTTTCTTCAAATCAGGTTTTAATATCTCCATTAACACATATCTAAATCAAATATTTATATGTGAAGCACTGTATGAAAAGCTACATAAGTATTGCATTACATAAGTTGTCATTAGTCAGTCATGAACATGATTGTCGTGAGGCCTTTAAAATTGTATCATGAATATTTTCCTGATTAAATCTTTCTTTTTTATAACAGTTTTTTAAAATACAAATATGTCAAAATAATTTTTAATAGTGCCAGTAATGGGCTAATGACAGATGATTACAGTTGCCATAAATGAAACTCTCTGTGTTTGATTTTCTTTTTTATACACACACGATTATGCTGTCGAGCTGTTGTATAAATGCAATGTCACACTCATAGCAGTGCTATATGGCTGTCTAACGCCTCGTTCACATGGGGCTTCAG
Associated Phenotype:
Not determined