ZMP
rtn1b
Ensembl ID:
ZFIN ID:
Description:
reticulon 1b [Source:RefSeq peptide;Acc:NP_001025119]
Human Orthologue:
RTN1
Human Description:
reticulon 1 [Source:HGNC Symbol;Acc:10467]
Mouse Orthologue:
Rtn1
Mouse Description:
reticulon 1 Gene [Source:MGI Symbol;Acc:MGI:1933947]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa43416 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa37007 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa43416
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000027758 | None | None | 212 | None | 7 |
| ENSDART00000060203 | Nonsense | 349 | 767 | 3 | 9 |
| ENSDART00000079079 | None | None | 262 | None | 7 |
| ENSDART00000128451 | Nonsense | 89 | 364 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 20 (position 20730970)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 20759137 |
| GRCz11 | 20 | 20658810 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAATGAACTCCATCCCAGACAGCACTCAAGCTTCAACAATCCCACCGGCT[C/T]AACCTGCCTCAAAGAAAGACAGTTCCCCAGTAGAAAATATGTCTGCCCCT
Long Flanking Sequence:
TGGGGCTAGGCTATGCAGAGGCGTGGCCTTCCTGGTATTGAGTTTAAGACCATTGGCCTAAAAGCCTAGTGTGTTGATACTAGTATGTGTTGACAGACACAGCACTGAGGTGTTCATGAACTTCATGCAAAGCTAGTTTTAAATCCCGGCTCATGGTTCTTTGCCTATCCATCCCTTCTTTTCTCTCAATGCATCACTGTTCTCCATTGCCCTCTCCATTAAAAAAGTGAAAAACACTTAACTACTGTATGCGCACATAGTTGCAGGAACACCGGACATAATGACTTTATGCTACAATTTGTAGTGTAAAATCACAGATTGAATTACACTGCCATGATAGAGCAGATGGCCACAAGCATTTTAGAAACACTCCTAAATATTTCCCTTTTTTCTTAATAGAAGACTCTGAATCTCCAATGGATCCAAACATCCAGGCTGGTGAAACTGAAATAATGAACTCCATCCCAGACAGCACTCAAGCTTCAACAATCCCACCGGCT[C/T]AACCTGCCTCAAAGAAAGACAGTTCCCCAGTAGAAAATATGTCTGCCCCTAAATCCACCTTGCCCCCTACTTCCCAGGGTTTTGAGGGTAACAGCGCCGAATCTGGTGACTCTGAGATTGAGCTGGTGTCTGAAGAACCAAGTCCACGAGCTCCCAGCTCTGGCTACATGAGCTTCAGTAAGACTCCTGCCACTGCTCTACCAACCATAGTTGCTTCCACAGCACCTGTCCCATCTTCTACCACTGCCATTCCCAAGAGCCTCGCCTTGCAGTATAGCATCTTGAGGGAGGAGCGTGAAGCAGAGCTGGACAGTGAACTGGCTCTGGAGTCCTGTGGAGAGGAAAGTCCAAAAAGATTAACCCACGGATCCTCAAAGCGCTACAAGGAGATTCCACAGGCAGTCAAAAAACCCACATCCCCAACTTCTGCAACTAAAGAACCATTTGTTACTTCCACTACACCTTCTACGACCATTCTGGCCCCAACCAGTGCCTCTAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37007
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000027758 | None | None | 212 | None | 7 |
| ENSDART00000060203 | Nonsense | 562 | 767 | 3 | 9 |
| ENSDART00000079079 | None | None | 262 | None | 7 |
| ENSDART00000128451 | Nonsense | 302 | 364 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 20 (position 20731610)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 20759777 |
| GRCz11 | 20 | 20659450 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGAGGTGCACAAGAAAGAAAGGAGACGGTCCAGTCAAGCCCGCAGGGGCT[C/A]AGAGAAAACATCTGCTCCACCAGCTGTCTTCCAGGGTTTCAGCAGGGAGA
Long Flanking Sequence:
AAGTCCACGAGCTCCCAGCTCTGGCTACATGAGCTTCAGTAAGACTCCTGCCACTGCTCTACCAACCATAGTTGCTTCCACAGCACCTGTCCCATCTTCTACCACTGCCATTCCCAAGAGCCTCGCCTTGCAGTATAGCATCTTGAGGGAGGAGCGTGAAGCAGAGCTGGACAGTGAACTGGCTCTGGAGTCCTGTGGAGAGGAAAGTCCAAAAAGATTAACCCACGGATCCTCAAAGCGCTACAAGGAGATTCCACAGGCAGTCAAAAAACCCACATCCCCAACTTCTGCAACTAAAGAACCATTTGTTACTTCCACTACACCTTCTACGACCATTCTGGCCCCAACCAGTGCCTCTAAAGAAAAGATGTCCACCATGGAAGAGAAGCCTAAACACAGCACAATTCTAAGTCCAGGCCTTCCAGAGCTGAAGGTAGAGCATCCTGCCGGGGAGGTGCACAAGAAAGAAAGGAGACGGTCCAGTCAAGCCCGCAGGGGCT[C/A]AGAGAAAACATCTGCTCCACCAGCTGTCTTCCAGGGTTTCAGCAGGGAGAAAGGTAAATGCATGTTCTTCAATTGCTTATAGTCACCCAAAAAACACAAGTTCACTTTTGTCCCTCTTTTGTGCTTATTCTGTAATTGATTACTAGGCCCACACAAAATCTGCATGTGCAAAAATCTGCAGATTGAGTTTTTATGTATTTACCTGTGTAAATGTGTGTAAATTAATATTTATTCAGTTTTGAAACTAATTTCAGTAATATCGTTCACTAATATAAAAATGTTCATATGATTTATTTACAATAAAGTATGTAAGGTAATATTTTCATCGTTTAGTATATACACTATATGAGAGGCTTGCTTTGTTTACCAAATAAGTGGATCTAATAAGATTTGCGTGGTGAACATTAAATTAAAGTAAAAAAGGTATTATTTTTACTTCATATTTTATTTCATTTTAGTTACAATACTCCCAAAACTATTCCGCATAAATTCACAGATTT
Associated Phenotype:
Not determined