Busch Lab

ZMP

col1a2

Ensembl ID:
ENSDARG00000020007
ZFIN ID:
ZDB-GENE-030131-8415
Description:
collagen alpha-2(I) chain [Source:RefSeq peptide;Acc:NP_892013]
Human Orthologue:
COL1A2
Human Description:
collagen, type I, alpha 2 [Source:HGNC Symbol;Acc:2198]
Mouse Orthologue:
Col1a2
Mouse Description:
collagen, type I, alpha 2 Gene [Source:MGI Symbol;Acc:MGI:88468]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa1763 Essential Splice Site Available for shipment Available now
sa17981 Essential Splice Site Available for shipment Available now
sa32257 Nonsense Available for shipment Available now
sa36897 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa1763
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000042990 None None 1352 None 50
ENSDART00000144544 Essential Splice Site 24 1352 2 50
Genomic Location (Zv9):
Chromosome 19 (position 41945790)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 41398044
GRCz11 19 40985164
KASP Assay ID:
554-1756.1 (used for ordering genotyping assays)
KASP Sequence:
TCTTTTCTCTGTCTTTCTGTTTTCCTCCTCCACCCCATCGCCATCACACA[G/A]CGGTCAGTATCCAAGTTATTACACTAATAGAGATATTTACCTTATCTGAT
Long Flanking Sequence:
TTAAAATGTTTAAAATATTAATAATATTTTTAAACGCTTTTTTTTTAAAACAACTATAAGGATGTAATTTTTGCTTTGGCATTTTTTTAGACATTAAAATACACTACAATATTTCCACCCACTCTTATGGACACAAAATCATAATAAATGCAAGTTTAACAAAATATGCCAAAATAAAAACAGCAAAATATGCCAAAAATTCAGTTCAGGCCTACTAAAATCAGGTTGATTTAAGCAATCATCACATTCATTGCAAAAATACCATTGCATTATTCATCTATTTTAGCATTTATTTTTGCATGCATTAGGCATAAACATTTACATATTTCTGTTGGATGTCTGGAATCATAAACAGTAGGCTCTTCTGTTTCTTTTTTTTTATACATAAATGTCTCAACATTCATAAATTCAACATGATGTGGCGTTCATAACTCTAACGAATCACCTCTGTCTTTTCTCTGTCTTTCTGTTTTCCTCCTCCACCCCATCGCCATCACACA[G/A]CGGTCAGTATCCAAGTTATTACACTAATAGAGATATTTACCTTATCTGATCTCAGATCTCCAAATGGATGATGATGATGATAATCGGTGAAAAGATCCTTCGGTCGATCTCAAATATTCCAGAGCATTTCGGATATCGGACTTTCTGGGTTTTTCCTTCTTGCCTGTGACGGGAAGGAGGAAAGCACGATTGGCTTGAGCAAATGTCAATGAAACTAGAGACCACCCTATCCTGCATAGCACACAACCTGGGCACAATGGCTCTTTTTAGATGGCCTTCCGAAGAGGTGGACTCAGGATAACAAAATCAACATGCTGCCGAAATTCCTCCAAGCTGGCGGATTTTGCCCAGCAGTTCCCTCAAGTGGACAAAACACATAGCATAGATTACTGGAATTGGCATAAATATGGAATATTATTTGGGGTCGACTCAAAACTTCTCACCTGAATATCACATTGATCACTAACAACAGAAGGTGCTTAAAGGAGCGGAACAAGAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17981
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000042990 Essential Splice Site 153 1352 10 50
ENSDART00000144544 Essential Splice Site 153 1352 10 50
Genomic Location (Zv9):
Chromosome 19 (position 41948173)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 41400427
GRCz11 19 40987547
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTTAGTAATATTTCTAACAAGGATCTTCATCNTTTTTTAATGTTTTCCAA[A/G]GGGTGCCCGTGGTTTCCCAGGAACTCCTGGACTTCCTGGCATGAAGGGAC
Long Flanking Sequence:
AGCATTTGAATTTTTCATGCCTCAAAAAATAAATATAACATAACATATCTTGATGTTTTTGTGAATATATAGGGAGCTCAAGGACTGCAAGGACATGCTGGTGAGCCTGGAGAGCCCGGACAGGCTGTGAGTGCTCTCTGGTCAACACTGTGTTCACACGGTTTGGAAATTATGTTTGAACTTTAACACTGATTTCTCTATCTGTCATCTCTTTACAGGGAGCTATTGGTGCTCGTGGCCCTCCTGGACCCCCTGGCAAAAATGGTGAAGATGTGAGTGTTATAATTCCATGTGCTAATGCTGAAATTATAACCGAACCGTGCATAACTCTATATTCATCTTCTTCTCAAAGGGCAACAATGGCAGACCTGGAAAGCCTGGAGACAGAGGAGTCCTTGGAGCTCAGGTAAGAGAGTCATAGATGTGTAAATCAGTGATGTATGCATCTACCTTAGTAATATTTCTAACAAGGATCTTCATCTTTTTTTAATGTTTTCCAA[A/G]GGGTGCCCGTGGTTTCCCAGGAACTCCTGGACTTCCTGGCATGAAGGGACACAGAGTAAGTTAGTAGTGTTGAGGACTGATGAGAAGACATAAGAAGCTGAAATTTGAGTTTTATTCATTTACCAAAAGAAGTCAAGGTCTCATGATCTTAATATCTTCCTCCTCAGGGTTACAATGGTATTGATGGACGCAAAGGAGAGCCTGGCGCAGCTGGTGCCAAGGTAAAGACACACACATGCACATGTAAAAGTTTAATACCTTAAAATGTTTCAGACTACACAGATATGCATCTTTAAAAATACATAAAATTATTACAGATTGTGTTTCCCAGTACTGGGTTGCAGCTGGCAGGGCATCTGCTGCATAAAACAAATGCTGGAATGGTTGGTGGTTCACTCTGTTGTGGCAACCACTGATAATTAAGGGACTAAGCCGAGGGGAAAATGAATAAATATTCCATTTTGTAGAATGAAACCCAATTCTTGAAAGTGCTAATGCTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32257
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000042990 Nonsense 879 1352 39 50
ENSDART00000144544 Nonsense 879 1352 39 50
Genomic Location (Zv9):
Chromosome 19 (position 41959357)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 41411611
GRCz11 19 40998731
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCAATGGTCTTCCTGGCTCCAGAGGTGACCGTGGTCTTCCTGGTATCCCC[G/T]GATCAGTTGTAAGTGCAATGACTTACCTCTTGATTCTGACTGTACTCAAA
Long Flanking Sequence:
TAGAGTTGGACCTCCTGGTCCTGCTGTAAGTAAACTCAGATTATTCTAAATTTACTTGTTCAAATCTAAAGTTTTAAAACAATTGCTTAATTTTAGAATGTAATGATTTTTGGTCATACATGTAAAATGTTTCTCTTCACATCAATTAGGGTATTGTTGGACCTGCTGGTCTCACTGGTCCCGCTGGAAAGGATGGCCCACGTGGTCCTCGTGGTGATGTTGGCCCTGCTGGTCCCCCAGGAGAGAATGGAATGATTGGACCTCTTGGTCTGGCTGGTGAGAAGGGACCCCCTGGAGAGGCTGGTGCACCTGTAAGTTCTAACTGAACAAAAGCGTTAATCTCAAAATATTACCAAGTATATATTACATCACAATAAACTTTTATTTTTTTTCAAAAATAGGGAGCACCTGGACCTGCTGGGCCTCAGGGTCAGCTGGGATCACAGGGATTCAATGGTCTTCCTGGCTCCAGAGGTGACCGTGGTCTTCCTGGTATCCCC[G/T]GATCAGTTGTAAGTGCAATGACTTACCTCTTGATTCTGACTGTACTCAAATTGATTAAAAAAATAGTTAAAGTGTTAATCTGATTTTGAGTGTGTCTGTGTTCTTTAGGGTGAACCTGGAAGAGTTGGCCCTGCTGGTGCCCCTGGTGCCCGTGGACCCGGTGGCAACATTGGCATGCCTGGTATGACTGGTCCTCAGGGTGAGGCTGGACGTGAGGTGAGTTATAGACTTATTTTTTCATAACACCCTTGGTGGGTACTTTTTTCATGCATTTACAATTGCATCTGTGTTGTTTTGTAGGGAAGCCCTGGCAATGATGGACCTCCTGGCCGTCCTGGTGCTGCTGGAATTAAGGTATTAATTTCTTAAATGTTATACAAATTTCACACGCATCTCTTCATATTTCCTATTATATCTAAGTAGAAATAGCTTTAATTACCAATAGAGTGTTTATATAAATAAATTAATTGAATTGTATTATTTTAACCAGGGTGACCGTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa36897
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000042990 Essential Splice Site 936 1352 42 50
ENSDART00000144544 Essential Splice Site 936 1352 42 50
Genomic Location (Zv9):
Chromosome 19 (position 41959846)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 41412100
GRCz11 19 40999220
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCAATAGAGTGTTTATATAAATAAATTAATTGAATTGTATTATTTTAACC[A/T]GGGTGACCGTGGTGAGCCTGGTTCCCCTGGAACTGCTGGACCTGTTGGTG
Long Flanking Sequence:
CTGGTATCCCCGGATCAGTTGTAAGTGCAATGACTTACCTCTTGATTCTGACTGTACTCAAATTGATTAAAAAAATAGTTAAAGTGTTAATCTGATTTTGAGTGTGTCTGTGTTCTTTAGGGTGAACCTGGAAGAGTTGGCCCTGCTGGTGCCCCTGGTGCCCGTGGACCCGGTGGCAACATTGGCATGCCTGGTATGACTGGTCCTCAGGGTGAGGCTGGACGTGAGGTGAGTTATAGACTTATTTTTTCATAACACCCTTGGTGGGTACTTTTTTCATGCATTTACAATTGCATCTGTGTTGTTTTGTAGGGAAGCCCTGGCAATGATGGACCTCCTGGCCGTCCTGGTGCTGCTGGAATTAAGGTATTAATTTCTTAAATGTTATACAAATTTCACACGCATCTCTTCATATTTCCTATTATATCTAAGTAGAAATAGCTTTAATTACCAATAGAGTGTTTATATAAATAAATTAATTGAATTGTATTATTTTAACC[A/T]GGGTGACCGTGGTGAGCCTGGTTCCCCTGGAACTGCTGGACCTGTTGGTGCTCCTGGACCCAATGGACCATCAGGCGCTGTTGGCAGACCTGGAAACCGTGGTGAATCTGTATGTGCCAATAAAGTCACAACATTTCCTGCATTACATGAGATTATACCATTTGTAATCAATCCAATTTTTCATACTTCCTTTAGGGTCCTTCTGGTCCTACTGGCGCTGTTGGACCTGCTGGAGCAAGAGGTGCACCTGTAAGTATGTCAGACATTATCCTTCTCAAAAGAACTCTCAAGTATGGAGCCAGTCTATGAACAAAGACTCCTTTTAAATAAAATCTCCTTGTTTTACAGGGCCCTGCTGGACCTCGTGGTGAGAAGGGTGTTGCTGGAGAAAAAGGAGACAGGGGTATGAAGGGACTTCGTGGACATCCTGGTCTGCAGGGAATGCCCGGACCTAACGTAGGTTATCAGTTTAAATGAATTTTTCCAATGTAAACAGTTTT
Associated Phenotype:
Not determined